RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 MAP3K3Q99759 626 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 GINS4Q9BRT9 223 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 UCK1Q9HA47 277 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 WBP1LQ9NX94 342 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 ZNF224Q9NZL3 707 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 MMP17Q9ULZ9 603 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 MMACHCQ9Y4U1 282 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 NUP210LQ5VU65 1888 aa10.23□□□□□ -0.77
USP4-205ENST00000431357 TRAV36DV7A0A075B6V5 113 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 A0A087WV48 116 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 B4DGG1 531 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 XKRYO14609 159 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CTAG2O75638 210 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 TMIGD3P0DMS9 266 aaPredicted RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 PTHLHP12272 177 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 ZNF250P15622 560 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CXCR1P25024 350 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 MST1P26927 711 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 GABRA4P48169 554 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SLC37A1P57057 533 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SEC61A1P61619 476 aaKnown RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 DCAF7P61962 342 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 DMWDQ09019 674 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 RAB11BQ15907 218 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 C9orf50Q5SZB4 431 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 FAAP20Q6NZ36 180 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 KANSL1Q7Z3B3 1105 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 GPAT4Q86UL3 456 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 PARGQ86W56 976 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 PRSS35Q8N3Z0 413 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 OR4C16Q8NGL9 310 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 FAM174AQ8TBP5 190 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 TSEN15Q8WW01 171 aaKnown RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 TAAR8Q969N4 342 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 MSANTD3Q96H12 275 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 OR8B4Q96RC9 309 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 LMF1Q96S06 567 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 RDH8Q9NYR8 311 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CACNA1IQ9P0X4 2223 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 LOC100289279A0A1B0GTE1 492 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 A0A1B0GTH9 108 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 hCG_1807616A0A1W2PRN6 198 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CIB4A0PJX0 185 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 H7C1C5 153 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SULT1C2O00338 296 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SLC17A2O00624 439 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SNAPINO95295 136 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 MT-ATP6P00846 226 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 IGLV3-19P01714 112 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 BGLAPP02818 100 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 PROS1P07225 676 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 VSIG10L2P0DP72 767 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CALCRP30988 508 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 S100A11P31949 105 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 PRSS3P35030 304 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 KIR3DL2P43630 455 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CAPZBP47756 277 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 GMFBP60983 142 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 LCN6P62502 163 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 SLC17A1Q14916 467 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 OR5M10Q6IEU7 315 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 MAMDC2Q7Z304 686 aaPredicted RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 NAXDQ8IW45 347 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 PTPMT1Q8WUK0 201 aaPredicted RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 HMGB4Q8WW32 186 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 MARC2Q969Z3 335 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 CHRNA10Q9GZZ6 450 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 ALX4Q9H161 411 aaPredicted RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 NXF5Q9H1B4 397 aaKnown RBP10.22□□□□□ -0.77
USP4-205ENST00000431357 SYT4Q9H2B2 425 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 UPB1Q9UBR1 384 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 CHD7Q9P2D1 2997 aa10.22□□□□□ -0.77
USP4-205ENST00000431357 FITM1A5D6W6 292 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 OR2W5A6NFC9 320 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 CHURC1-FNTBB4DL54 471 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 TMEM150CB9EJG8 249 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 F5H5P2 479 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 EIF4E2O60573 245 aaKnown RBP10.21□□□□□ -0.77
USP4-205ENST00000431357 RP2O75695 350 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 MELTFP08582 738 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 PPP3CBP16298 524 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 RAB3AP20336 220 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 CD1CP29017 333 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 PBX2P40425 430 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 FASLGP48023 281 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 POU3F4P49335 361 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 FNTBP49356 437 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 HOXA1P49639 335 aaPredicted RBP10.21□□□□□ -0.77
USP4-205ENST00000431357 ACTBP60709 375 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 ACTG1P63261 375 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 WDR38Q5JTN6 314 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 SLC18B1Q6NT16 456 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 ZNF679Q8IYX0 411 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 OR2AK2Q8NG84 335 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 OR51D1Q8NGF3 324 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 OR10AC1Q8NH08 325 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 RNF128Q8TEB7 428 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 FAM3DQ96BQ1 224 aa10.21□□□□□ -0.77
USP4-205ENST00000431357 KLHDC7BQ96G42 594 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms