RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 OR4A15Q8NGL6 344 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ITLN2Q8WWU7 325 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 VPS33AQ96AX1 596 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SFXN2Q96NB2 322 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 NODALQ96S42 347 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 EBF4Q9BQW3 602 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PIGQQ9BRB3 760 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 DCLRE1BQ9H816 532 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 RMND5AQ9H871 391 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ANKRA2Q9H9E1 313 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 UBQLN4Q9NRR5 601 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PNPLA3Q9NST1 481 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 KLHL9Q9P2J3 617 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 A0A087WZY1 265 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 E9PBE3 544 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ZNF195O14628 629 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 CIB2O75838 187 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 UTS2O95399 124 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PSMG1O95456 288 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ANP32DO95626 131 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 C6orf47O95873 294 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 HMGN2P05204 90 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 LAMP1P11279 417 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 MYOD1P15172 320 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ME2P23368 584 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PTPN6P29350 595 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ZNF41P51814 821 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 DIO3P55073 304 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SEC61BP60468 96 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 IRX1P78414 480 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 STX5Q13190 355 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 LASP1Q14847 261 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 ZNF630Q2M218 657 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 TRMT5Q32P41 509 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 SLC25A35Q3KQZ1 300 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 NHSL2Q5HYW2 709 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 DCST1Q5T197 706 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PDSS1Q5T2R2 415 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 RAET1LQ5VY80 246 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 MFSD12Q6NUT3 480 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 C8orf82Q6P1X6 216 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 EPGNQ6UW88 154 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 NPSR1Q6W5P4 371 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 C16orf62Q7Z3J2 963 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 P4HA3Q7Z4N8 544 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 EPHX4Q8IUS5 362 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 KRTCAP2Q8N6L1 136 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 B4GALNT2Q8NHY0 566 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 TESCQ96BS2 214 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SLC35G5Q96KT7 338 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 OR10A4Q9H209 315 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 UBQLN3Q9H347 655 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PIGUQ9H490 435 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 DENND2DQ9H6A0 471 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 MAGIXQ9H6Y5 334 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 FBXL2Q9UKC9 423 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 LIPGQ9Y5X9 500 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 NINQ8N4C6 2090 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 DNAJC13O75165 2243 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 ICE1Q9Y2F5 2266 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 RNF103-CHMP3A0A140T963 221 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 UBDO15205 165 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 SERPINI2O75830 405 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 CPSF4O95639 269 aaKnown RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 CLDN1O95832 211 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 ANGPTL1O95841 491 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 NUDT14O95848 222 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 IL6P05231 212 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 NGFRP08138 427 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 IGHV4-30-4P0DP06 118 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 TBXA2RP21731 343 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 UQCRC2P22695 453 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 HOXD3P31249 432 aaPredicted RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 KHKP50053 298 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 GTF2A1P52655 376 aaPredicted RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 CD81P60033 236 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 SNTB1Q13884 538 aaKnown RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 GNA13Q14344 377 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 PPA1Q15181 289 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 GLYR1Q49A26 553 aaPredicted RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 RIPPLY2Q5TAB7 128 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 FAM219BQ5XKK7 198 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 OR4F3Q6IEY1 312 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 YRDCQ86U90 279 aaKnown RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 RIMKLAQ8IXN7 391 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 PSMA8Q8TAA3 256 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 FBXO30Q8TB52 745 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 ZPLD1Q8TCW7 415 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 PIK3R3Q92569 461 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 STMN2Q93045 179 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 ZFP3Q96NJ6 502 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 PANX1Q96RD7 426 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 TTYH2Q9BSA4 534 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 CCDC28BQ9BUN5 200 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 RTN4RQ9BZR6 473 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 OR2B2Q9GZK3 357 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 DSN1Q9H410 356 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 CALHM2Q9HA72 323 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 PROK2Q9HC23 129 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 TCF7L2Q9NQB0 619 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms