RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PLPP7Q8NBV4 271 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 OR11H4Q8NGC9 324 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 ADOQ96SZ5 270 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 ALG12Q9BV10 488 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 TBL1XR1Q9BZK7 514 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 FKRPQ9H9S5 495 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 PRTFDC1Q9NRG1 225 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 SDHAF3Q9NRP4 125 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 IL17BQ9UHF5 180 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 MSRAQ9UJ68 235 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 GPANK1O95872 356 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 ZNF823P16415 610 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 PBX2P40425 430 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 SPOCK1Q08629 439 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 TMEM71Q6P5X7 295 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 RBMS3Q6XE24 437 aaKnown RBP10.93□□□□□ -0.66
HMGB1-206ENST00000405805 LRP11Q86VZ4 500 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 OR2L8Q8NGY9 312 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 DCUN1D4Q92564 292 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 ADAM29Q9UKF5 820 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 IL33O95760 270 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 CFDP00746 253 aaPredicted RBP10.93□□□□□ -0.66
HMGB1-206ENST00000405805 HOXD4P09016 255 aaPredicted RBP10.93□□□□□ -0.66
HMGB1-206ENST00000405805 EPXP11678 715 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 NME2P22392 152 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 SLC6A1P30531 599 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 LTBQ06643 244 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 ALG10Q5BKT4 473 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 TPRA1Q86W33 373 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 SFXN5Q8TD22 340 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 SMIM3Q9BZL3 60 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 LHX9Q9NQ69 397 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 GSN-AS1Q9NRJ2 163 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 CMC2Q9NRP2 79 aa10.93□□□□□ -0.66
HMGB1-206ENST00000405805 GAR1Q9NY12 217 aaKnown RBP10.93□□□□□ -0.66
HMGB1-206ENST00000405805 CPED1A4D0V7 1026 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 PAPLNO95428 1278 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 GPR75O95800 540 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 CYB5AP00167 134 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 CPN1P15169 458 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 CDK2P24941 298 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 IL12BP29460 328 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 CD80P33681 288 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SEC61A1P61619 476 aaKnown RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 TRA2BP62995 288 aaKnown RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 GUCA2AQ02747 115 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 LIPNQ5VXI9 398 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 Q6ZTK2 550 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 ZAR1Q86SH2 424 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 ZNF383Q8NA42 475 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 NRIP3Q9NQ35 241 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 PARPBPQ9NWS1 579 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 NCDNQ9UBB6 729 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 MRPS2Q9Y399 296 aaKnown RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 APBB3O95704 486 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SMIM6P0DI80 62 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 NID1P14543 1247 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 PRSS3P35030 304 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 C21orf58P58505 322 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 OR51S1Q8NGJ8 323 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 OR5M1Q8NGP8 315 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 KCNK15Q9H427 330 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 HRASLSQ9HDD0 168 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 ABRACLQ9P1F3 81 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 LRIT1Q9P2V4 623 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SDK2Q58EX2 2172 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 CACNA1DQ01668 2161 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 PRSS38A1L453 326 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 FITM1A5D6W6 292 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 EIF3GO75821 320 aaKnown RBP eCLIP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SCAF4O95104 1147 aaKnown RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 FUT5Q11128 374 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 RPL13AP3Q6NVV1 102 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SFTPA2Q8IWL1 248 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 MAML2Q8IZL2 1156 aaPredicted RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 DUSP18Q8NEJ0 188 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 OR1E3Q8WZA6 343 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 ASB16Q96NS5 453 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SPSB2Q99619 263 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 MED17Q9NVC6 651 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 FBXL21Q9UKT6 434 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 GVINP1Q7Z2Y8 2422 aa10.92□□□□□ -0.66
HMGB1-206ENST00000405805 TP53BP1Q12888 1972 aaPredicted RBP10.92□□□□□ -0.66
HMGB1-206ENST00000405805 SERTM1A2A2V5 107 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 NDUFS1P28331 727 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 CCR9P51686 369 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 BTG1P62324 171 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ARFRP1Q13795 201 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 GPR18Q14330 331 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 LINC00303Q3SY05 128 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 OR52W1Q6IF63 320 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ZNF550Q7Z398 422 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 HSD17B8Q92506 261 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 KCTD12Q96CX2 325 aaKnown RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 PELI1Q96FA3 418 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 WDR92Q96MX6 357 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SERINC2Q96SA4 455 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 INTS14Q96SY0 518 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 KIF25Q9UIL4 384 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 CAMK2AQ9UQM7 478 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms