RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 A0A0G2JNJ9 132 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 ZNF587BE7ETH6 402 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 DCTN6O00399 190 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 TNFSF13O75888 250 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 OPRM1P35372 400 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 GUCA1AP43080 201 aaPredicted RBP15.96■□□□□ 0.15
SDC1-203ENST00000403076 ZNF84P51523 738 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 NUDT6P53370 316 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 SMN1Q16637 294 aaKnown RBP15.96■□□□□ 0.15
SDC1-203ENST00000403076 C6orf141Q5SZD1 244 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 LCN1P1Q5VSP4 162 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 SLC25A47Q6Q0C1 308 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 ZNF786Q8N393 782 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 BPIFB6Q8NFQ5 453 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 STARD4Q96DR4 205 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 CRLF2Q9HC73 371 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 Q9UFV3 132 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.96■□□□□ 0.15
SDC1-203ENST00000403076 MOKQ9UQ07 419 aa15.96■□□□□ 0.15
SDC1-203ENST00000403076 COA3Q9Y2R0 106 aaPredicted RBP15.96■□□□□ 0.15
SDC1-203ENST00000403076 IGKV1D-43A0A0B4J1Z2 117 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 A0A1B0GUH1 482 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 A0A1W2PPL8 197 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 SH3D21A4FU49 640 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 SLC22A31A6NKX4 558 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 DHHO43323 396 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 C1QL1O75973 258 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 GLCEO94923 617 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 HLA-DQA2P01906 255 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 ROR2Q01974 943 aaKnown RBP15.95■□□□□ 0.14
SDC1-203ENST00000403076 TEKQ02763 1124 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 FAPQ12884 760 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 ETFDHQ16134 617 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 SLC35D3Q5M8T2 416 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 FBXW9Q5XUX1 488 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 ABHD12BQ7Z5M8 362 aaPredicted RBP15.95■□□□□ 0.14
SDC1-203ENST00000403076 ZBTB46Q86UZ6 589 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 FBLIM1Q8WUP2 373 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 NMD3Q96D46 503 aaKnown RBP15.95■□□□□ 0.14
SDC1-203ENST00000403076 FOXN4Q96NZ1 517 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 TEAD3Q99594 435 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 RACGAP1Q9H0H5 632 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 SEC61A2Q9H9S3 476 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 GPR35Q9HC97 309 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 PLSCR4Q9NRQ2 329 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 PCDHGB5Q9Y5G0 923 aa15.95■□□□□ 0.14
SDC1-203ENST00000403076 PHF3Q92576 2039 aaKnown RBP15.95■□□□□ 0.14
SDC1-203ENST00000403076 IGLV1-36A0A0B4J1U3 117 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 FAM20BO75063 409 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 BMP5P22003 454 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 SLC2A5P22732 501 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 HTR1FP30939 366 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 ATP6V1E1P36543 226 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 UQCRFS1P47985 274 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 GLO1Q04760 184 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 CEACAM16Q2WEN9 425 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 TFAP2EQ6VUC0 442 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 B3GLCTQ6Y288 498 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 ZMYND19Q96E35 227 aaPredicted RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 SCN3BQ9NY72 215 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 WARS2Q9UGM6 360 aaKnown RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 RPL36Q9Y3U8 105 aaKnown RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 ESPL1Q14674 2120 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 DVL2O14641 736 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 LRRTM2O43300 516 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 IL18BPO95998 194 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 BLVRAP53004 296 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 C10orf128Q5T292 105 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 C9orf135Q5VTT2 229 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 GLB1L2Q8IW92 636 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 ZNF610Q8N9Z0 462 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 ZNRF4Q8WWF5 429 aa15.94■□□□□ 0.14
SDC1-203ENST00000403076 OPN3Q9H1Y3 402 aaPredicted RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 ZNF629Q9UEG4 869 aaPredicted RBP15.94■□□□□ 0.14
SDC1-203ENST00000403076 KMT2BQ9UMN6 2715 aaPredicted RBP15.93■□□□□ 0.14
SDC1-203ENST00000403076 CCDC182A6NF36 153 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 TVP23AA6NH52 213 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 XPNPEP2O43895 674 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 GPANK1O95872 356 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 CGAP01215 116 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 CD8BP10966 210 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 LAP3P28838 519 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 GSTT1P30711 240 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 MTNR1AP48039 350 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 CXCR4P61073 352 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 CSNK2BP67870 215 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 ZNF91Q05481 1191 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 TMED1Q13445 227 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 SGCAQ16586 387 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 LAIR2Q6ISS4 152 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 MYO7BQ6PIF6 2116 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 LINGO2Q7L985 606 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 ZNF511Q8NB15 262 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 ZNF837Q96EG3 531 aaPredicted RBP15.93■□□□□ 0.14
SDC1-203ENST00000403076 RNFT2Q96EX2 444 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 PIGMQ9H3S5 423 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 MALT1Q9UDY8 824 aa15.93■□□□□ 0.14
SDC1-203ENST00000403076 RALYQ9UKM9 306 aaKnown RBP15.93■□□□□ 0.14
SDC1-203ENST00000403076 INTS1Q8N201 2190 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms