RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DOCK5Q9H7D0 1870 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 CCDC163A0A0D9SF12 145 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 CXorf65A6NEN9 183 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 TMPRSS11DO60235 418 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 F13BP05160 661 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 PAX6P26367 422 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 HTR2CP28335 458 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 RBP2P50120 134 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 OTPQ5XKR4 325 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 AWAT2Q6E213 333 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 SLC22A25Q6T423 547 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 COX15Q7KZN9 410 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 CAMKMTQ7Z624 323 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 SFXN5Q8TD22 340 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 FRZBQ92765 325 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 COA4Q9NYJ1 87 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 IL36AQ9UHA7 158 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 KCNE3Q9Y6H6 103 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 KIAA0355O15063 1070 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 XRCC3O43542 346 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 GSTZ1O43708 216 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 CNMDO75829 334 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 HIST1H1CP16403 213 aaKnown RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 TRHRP34981 398 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 RIDAP52758 137 aaKnown RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 IAH1Q2TAA2 248 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 C2orf76Q3KRA6 126 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF283Q8N7M2 679 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 OR4K15Q8NH41 348 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 RASD2Q96D21 266 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 NIPSNAP3BQ9BS92 247 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 EXOGQ9Y2C4 368 aaKnown RBP8.54□□□□□ -1.04
COL28A1-201ENST00000399429 B3GALT1Q9Y5Z6 326 aa8.54□□□□□ -1.04
COL28A1-201ENST00000399429 A0A1W2PPE2 198 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 CDC42EP2O14613 210 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 GLSO94925 669 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SLCO2B1O94956 709 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 EOMESO95936 686 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 OMGP23515 440 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 B4GALNT1Q00973 533 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SGCAQ16586 387 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 DND1Q8IYX4 353 aaKnown RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 WFDC5Q8TCV5 224 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 MITD1Q8WV92 249 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ELOVL3Q9HB03 270 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 LOC100289279A0A1B0GTE1 492 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SLC5A10A0PJK1 596 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 GALR3O60755 368 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 TMIGD3P0DMS9 266 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 CD37P11049 281 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF25P17030 456 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SLC11A1P49279 550 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 DOC2BQ14184 412 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 MPPED2Q15777 294 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SPIN3Q5JUX0 258 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 RNF165Q6ZSG1 346 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF610Q8N9Z0 462 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 OR56B1Q8NGI3 324 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 THOC3Q96J01 351 aaKnown RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 TSSK2Q96PF2 358 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 RAB33BQ9H082 229 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 C8orf33Q9H7E9 229 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SAGE1Q9NXZ1 904 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF726A6NNF4 738 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 PPM1DO15297 605 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 NSA2O95478 260 aaKnown RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 WASP42768 502 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 GSK3AP49840 483 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 RASGEF1BQ0VAM2 473 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 TMEM255AQ5JRV8 349 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ETFRF1Q6IPR1 90 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF836Q6ZNA1 936 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 MDGA2Q7Z553 956 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 RNF113BQ8IZP6 322 aaKnown RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 OR5M8Q8NGP6 311 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 NRIP2Q9BQI9 281 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 GGACTQ9BVM4 153 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 PIPOXQ9P0Z9 390 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 SLC23A2Q9UGH3 650 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 RBM7Q9Y580 266 aaKnown RBP8.53□□□□□ -1.04
COL28A1-201ENST00000399429 PHLPP1O60346 1717 aa8.53□□□□□ -1.04
COL28A1-201ENST00000399429 BHLHE40O14503 412 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 TERTO14746 1132 aaKnown RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 FGF18O76093 207 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 KLF8O95600 359 aaPredicted RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 CXCL14O95715 111 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 PRNPP04156 253 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 KLK3P07288 261 aaPredicted RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 HIST1H1TP22492 207 aaPredicted RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 GDI1P31150 447 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 PWWP2BQ6NUJ5 590 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 CD300LDQ6UXZ3 194 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 NR2C2APQ86WQ0 139 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 LILRB2Q8N423 598 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 PLPP5Q8NEB5 264 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 NEK7Q8TDX7 302 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 C2orf15Q8WU43 125 aaKnown RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 SLC25A28Q96A46 364 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 GAL3ST4Q96RP7 486 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 MS4A8Q9BY19 250 aa8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms