RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZFP3Q96NJ6 502 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 OR2M2Q96R28 347 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 NUAK2Q9H093 628 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 RACGAP1Q9H0H5 632 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 SCOCQ9UIL1 159 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 CLEC4AQ9UMR7 237 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 B9D1Q9UPM9 204 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 DNAJC13O75165 2243 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 A0A087WXM4 84 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 A0A1W2PPL8 197 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 ZNHIT1O43257 154 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 MRPS14O60783 128 aaKnown RBP12.6□□□□□ -0.39
SKA1-202ENST00000398452 TMCC2O75069 709 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 TGM6O95932 706 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 QDPRP09417 244 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 PGA4P0DJD7 388 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 PGA3P0DJD8 388 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 ZNF823P16415 610 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 SELENOPP49908 381 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 ADGRE4PQ86SQ3 457 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 UBE2J2Q8N2K1 259 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 SVOPQ8N4V2 548 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 CNEP1R1Q8N9A8 125 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 POMGNT2Q8NAT1 580 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 BBS1Q8NFJ9 593 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 OR51L1Q8NGJ5 315 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 OR51G2Q8NGK0 314 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 NSMAFQ92636 917 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 TMEM80Q96HE8 168 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 CNN2Q99439 309 aaKnown RBP12.6□□□□□ -0.39
SKA1-202ENST00000398452 TEAD3Q99594 435 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 SLCO5A1Q9H2Y9 848 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 ZNF696Q9H7X3 374 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 PCDHGB5Q9Y5G0 923 aa12.6□□□□□ -0.39
SKA1-202ENST00000398452 PTPN13Q12923 2485 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 SS18L1O75177 396 aaPredicted RBP12.59□□□□□ -0.39
SKA1-202ENST00000398452 WISP2O76076 250 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 RAB36O95755 333 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 CRHP06850 196 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 CLUP10909 449 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 PIPP12273 146 aaPredicted RBP12.59□□□□□ -0.39
SKA1-202ENST00000398452 DCKP27707 260 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 GSTT1P30711 240 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 PYCR1P32322 319 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 ACTC1P68032 377 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 ACTA1P68133 377 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 SIRPAP78324 504 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 RUNX1T1Q06455 604 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 TMEM211Q6ICI0 200 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 FGD2Q7Z6J4 655 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 GLB1L2Q8IW92 636 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 C20orf196Q8IYI0 205 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 OR6V1Q8N148 313 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 ZIC4Q8N9L1 334 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 ST6GALNAC3Q8NDV1 305 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 TSPAN14Q8NG11 270 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 GGHQ92820 318 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 TMEM54Q969K7 222 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 MCHR2Q969V1 340 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 ZMYND19Q96E35 227 aaPredicted RBP12.59□□□□□ -0.39
SKA1-202ENST00000398452 TSSK2Q96PF2 358 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 CDADC1Q9BWV3 514 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 RBM24Q9BX46 236 aaKnown RBP12.59□□□□□ -0.39
SKA1-202ENST00000398452 HCAR1Q9BXC0 346 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 MRPL13Q9BYD1 178 aaKnown RBP12.59□□□□□ -0.39
SKA1-202ENST00000398452 NMNAT2Q9BZQ4 307 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 SEC61A2Q9H9S3 476 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 HAO2Q9NYQ3 351 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 PSORS1C1Q9UIG5 152 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 SH3BGRL2Q9UJC5 107 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 POLR1DQ9Y2S0 133 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 NAV2Q8IVL1 2488 aa12.59□□□□□ -0.39
SKA1-202ENST00000398452 TRGV8A0A0C4DH27 118 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 MBD3L4A6NDZ8 208 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 MBD3L3A6NE82 208 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 MBD3L5A6NJ08 208 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 FAM171A2A8MVW0 826 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 ZNF587BE7ETH6 402 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 TMIGD3P0DMS9 266 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 CTLA4P16410 223 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 AGTR1P30556 359 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 FMODQ06828 376 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 ST3GAL4Q11206 333 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 PLXDC2Q6UX71 529 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 NHLRC1Q6VVB1 395 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 FAM214BQ7L5A3 538 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 ZBTB46Q86UZ6 589 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 ERI1Q8IV48 349 aaKnown RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 GCNT2Q8N0V5 402 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 TMEM123Q8N131 208 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 MBD3L2Q8NHZ7 208 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 INTS14Q96SY0 518 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 DDOQ99489 341 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 LINC00470Q9BZP3 86 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 KCNN2Q9H2S1 579 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 C12orf49Q9H741 205 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 ERGIC3Q9Y282 383 aa12.58□□□□□ -0.4
SKA1-202ENST00000398452 COA3Q9Y2R0 106 aaPredicted RBP12.58□□□□□ -0.4
SKA1-202ENST00000398452 MYL12BO14950 172 aa12.57□□□□□ -0.4
SKA1-202ENST00000398452 DHHO43323 396 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms