RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 EMC6Q9BV81 110 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 QRSL1Q9H0R6 528 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 TIMM10BQ9Y5J6 103 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 COL1A1P02452 1464 aaPredicted RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 HPNP05981 417 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 TNFRSF1AP19438 455 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 IMPA1P29218 277 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 ARR3P36575 388 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 RPL13AP40429 203 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 ID4P47928 161 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 CLDN12P56749 244 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 CDK5R2Q13319 367 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 KCNAB1Q14722 419 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 PHLDA2Q53GA4 152 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 PHYHD1Q5SRE7 291 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 DHRS13Q6UX07 377 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 TSEN54Q7Z6J9 526 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 LGI3Q8N145 548 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 ENDOVQ8N8Q3 282 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 ZNF511Q8NB15 262 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 HSD17B11Q8NBQ5 300 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 ZNF740Q8NDX6 193 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 UTP4Q969X6 686 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 A0A096LPE4 126 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 A0A1W2PPZ6 126 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 SLC22A20A6NK97 555 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 NCBP2LA6PVI3 153 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 STMND1H3BQB6 276 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 MT-ATP6P00846 226 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 APOBEC1P41238 236 aaKnown RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 HTR2BP41595 481 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 Q499Y3 187 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 LACC1Q8IV20 430 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 C7orf43Q8WVR3 580 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 SLC22A12Q96S37 553 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 PRRX2Q99811 253 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 PLK3Q9H4B4 646 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 KIR3DX1Q9H7L2 352 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 CHST11Q9NPF2 352 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 ZNF331Q9NQX6 463 aaPredicted RBP6.62□□□□□ -1.35
UPF2-203ENST00000397053 TAS2R5Q9NYW4 299 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 LHX3Q9UBR4 397 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 OSGIN2Q9Y236 505 aa6.62□□□□□ -1.35
UPF2-203ENST00000397053 RBP2P50120 134 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 KIAA1024LP59773 190 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 ZNF266Q14584 549 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 IAH1Q2TAA2 248 aaPredicted RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 TMEM240Q5SV17 173 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 APOOLQ6UXV4 268 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 DCXRQ7Z4W1 244 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 DPPA2Q7Z7J5 298 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 LRRC28Q86X40 367 aaPredicted RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 CDC20BQ86Y33 519 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 FBXO27Q8NI29 283 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 MS4A4AQ96JQ5 239 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 ASB16Q96NS5 453 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR51E2Q9H255 320 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 P4HTMQ9NXG6 502 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 RIMBP3CA6NJZ7 1639 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 RIMBP3BA6NNM3 1639 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 RIMBP3Q9UFD9 1639 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 CHEK1O14757 476 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 HLA-HP01893 362 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 RPL35P42766 123 aaKnown RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 ZNF133P52736 654 aaPredicted RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 CLDN15P56746 228 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 UBE2IP63279 158 aaKnown RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 ZNF425Q6IV72 752 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR2AK2Q8NG84 335 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 DEDD2Q8WXF8 326 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 ST8SIA2Q92186 375 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 SLC35A4Q96G79 324 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 ZNF346Q9UL40 294 aaKnown RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 ARID1AO14497 2285 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 XKRY2A2RUG3 117 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 LRIT2A6NDA9 550 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 DFFBO76075 338 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 PTTG1O95997 202 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 CTXN2P0C2S0 81 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 CTRB1P17538 263 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 PSMB3P49720 205 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 ZNF91Q05481 1191 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 KEAP1Q14145 624 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 CTRB2Q6GPI1 263 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR2A2Q6IF42 318 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 BTNL3Q6UXE8 466 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 USP51Q70EK9 711 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 LRP10Q7Z4F1 713 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 COMMD7Q86VX2 200 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 DEFB124Q8NES8 71 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 SLC30A7Q8NEW0 376 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR51A2Q8NGJ7 313 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR5B3Q8NH48 314 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 AKR1E2Q96JD6 320 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 FYTTD1Q96QD9 318 aaKnown RBP6.61□□□□□ -1.35
UPF2-203ENST00000397053 MED20Q9H944 212 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 RNF150Q9ULK6 438 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 OR51B4Q9Y5P0 310 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 SLIT3O75094 1523 aa6.61□□□□□ -1.35
UPF2-203ENST00000397053 C5orf49A4QMS7 147 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms