RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 FAM69AQ5T7M9 428 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 C11orf71Q6IPW1 123 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 MEX3DQ86XN8 651 aaKnown RBP9.05□□□□□ -0.96
NEDD8-202ENST00000396828 PHC2Q8IXK0 858 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 ZNF100Q8IYN0 542 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 CLDN22Q8N7P3 220 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 OR52L1Q8NGH7 329 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 LIPHQ8WWY8 451 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 TFAP2CQ92754 450 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 KTI12Q96EK9 354 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-202ENST00000396828 MBOAT4Q96T53 435 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 GPA33Q99795 319 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 APOL4Q9BPW4 351 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 REPIN1Q9BWE0 567 aaKnown RBP9.05□□□□□ -0.96
NEDD8-202ENST00000396828 TAPBPLQ9BX59 468 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 C1QTNF6Q9BXI9 259 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 ASPNQ9BXN1 380 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 GRIP2Q9C0E4 1043 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 FKRPQ9H9S5 495 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 NANSQ9NR45 359 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 TBC1D23Q9NUY8 699 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 REV1Q9UBZ9 1251 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 ZNF229Q9UJW7 825 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 SLC25A15Q9Y619 301 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 NBEAL1Q6ZS30 2694 aa9.05□□□□□ -0.96
NEDD8-202ENST00000396828 CDC42EP2O14613 210 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SLC16A6O15403 523 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 DENRO43583 198 aaKnown RBP9.04□□□□□ -0.96
NEDD8-202ENST00000396828 NPIPB7O75200 414 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 LY6HO94772 140 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SOX14O95416 240 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 ITGA5P08648 1049 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 TTKP33981 857 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 PRPS1P60891 318 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 ADARB1P78563 741 aaKnown RBP9.04□□□□□ -0.96
NEDD8-202ENST00000396828 H3F3AP84243 136 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 PTGES3Q15185 160 aaKnown RBP9.04□□□□□ -0.96
NEDD8-202ENST00000396828 GABRA6Q16445 453 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 C9orf135Q5VTT2 229 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 FBXW9Q5XUX1 488 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SLC27A4Q6P1M0 643 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SMARCD3Q6STE5 483 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 ZNF620Q6ZNG0 422 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 NANOGNBQ7Z5D8 188 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 UBE2J2Q8N2K1 259 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SETD9Q8NE22 299 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 OR10H5Q8NGA6 315 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 OR13C2Q8NGS9 318 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 MFSD8Q8NHS3 518 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 FANK1Q8TC84 345 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 TAAR8Q969N4 342 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 SLC25A36Q96CQ1 311 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 MUCL1Q96DR8 90 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 HRASLS5Q96KN8 279 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 ZNF570Q96NI8 536 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 CACNG6Q9BXT2 260 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 ANKRD60Q9BZ19 345 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 PRRG3Q9BZD7 231 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 EGLN3Q9H6Z9 239 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 IL20Q9NYY1 176 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 LRCH1Q9Y2L9 728 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 HDGFL3Q9Y3E1 203 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 GMPPBQ9Y5P6 360 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 CDH10Q9Y6N8 788 aa9.04□□□□□ -0.96
NEDD8-202ENST00000396828 HEATR1Q9H583 2144 aaKnown RBP9.04□□□□□ -0.96
NEDD8-202ENST00000396828 TRAV27A0A087WT01 109 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 ZC3H12DA2A288 527 aaKnown RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 NDUFB2O95178 105 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 OR6A2O95222 327 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 BGLAPP02818 100 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 TP53P04637 393 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 ASAH2BP0C7U1 165 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 IMPDH2P12268 514 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 CD40P25942 277 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 SLC6A6P31641 620 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 POLR2IP36954 125 aaKnown RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 CDC42P60953 191 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 OR7A5Q15622 319 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 AGAP6Q5VW22 663 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 KRT80Q6KB66 452 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 CASP12Q6UXS9 341 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 SLC46A3Q7Z3Q1 461 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 C8orf59Q8N0T1 100 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 DEPDC4Q8N2C3 294 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 LRRC17Q8N6Y2 441 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 ZNF525Q8N782 197 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 WDR31Q8NA23 367 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 OR2T33Q8NG76 320 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 OR51A7Q8NH64 312 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 NANOS1Q8WY41 292 aaKnown RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 CNBD2Q96M20 576 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 MUS81Q96NY9 551 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 MOGAT1Q96PD6 335 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 TNFRSF13CQ96RJ3 184 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 DHRS9Q9BPW9 319 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 USB1Q9BQ65 265 aaKnown RBP9.03□□□□□ -0.96
NEDD8-202ENST00000396828 PTDSS2Q9BVG9 487 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 TSSK6Q9BXA6 273 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 OR52D1Q9H346 318 aa9.03□□□□□ -0.96
NEDD8-202ENST00000396828 IMPAD1Q9NX62 359 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms