RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DEFB115Q30KQ5 88 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 OR5AP2Q8NGF4 316 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 FBXW5Q969U6 566 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 CYB5R1Q9UHQ9 305 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 TMEM131LA2VDJ0 1609 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 A0A0A6YYC8 382 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-202ENST00000394243 A0A1W2PPQ1 181 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 I3L1I5 382 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-202ENST00000394243 GPR171O14626 319 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 CALCBP10092 127 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 SLC2A1P11166 492 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 GCH1P30793 250 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 ANKRD34AQ69YU3 496 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 TSLPQ969D9 159 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 WDR89Q96FK6 387 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-202ENST00000394243 UBL7Q96S82 380 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-202ENST00000394243 NXF2Q9GZY0 626 aaKnown RBP10.94□□□□□ -0.66
SYNPO-202ENST00000394243 RHOFQ9HBH0 211 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 MUTYHQ9UIF7 546 aa10.94□□□□□ -0.66
SYNPO-202ENST00000394243 ZNF320A2RRD8 509 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 RGS11O94810 467 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 F2P00734 622 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 OR8U8P0C7N1 319 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 PIPP12273 146 aaPredicted RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ITGB8P26012 769 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 PSMB5P28074 263 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 BTLAQ7Z6A9 289 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 OR2AK2Q8NG84 335 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 OR4D10Q8NGI6 311 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 OR52B4Q8NGK2 314 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ZNF845Q96IR2 970 aaPredicted RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ZDHHC11Q9H8X9 412 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 KIDINS220Q9ULH0 1771 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 EDN3P14138 238 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 RPL12P30050 165 aaKnown RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ARRB2P32121 409 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 GABRA2P47869 451 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 IQCJQ1A5X6 159 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 SPRYD7Q5W111 196 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 GDF7Q7Z4P5 450 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 HSD11B1LQ7Z5J1 315 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ANGPTL5Q86XS5 388 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 LINC00346Q8IVM7 164 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 PDLIM5Q96HC4 596 aaKnown RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 EVA1AQ9H8M9 152 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 UBQLN4Q9NRR5 601 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 LAMP3Q9UQV4 416 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 B3GALT5Q9Y2C3 310 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 RAB27BO00194 218 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 FURINP09958 794 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 SFTA3P0C7M3 94 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 CPMP14384 443 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 MMP11P24347 488 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 REEP5Q00765 189 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 CXorf36Q9H7Y0 433 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 APOBEC3BQ9UH17 382 aaKnown RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 A0A1B0GUH1 482 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 SLC17A1Q14916 467 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 S100A7AQ86SG5 101 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 FIBINQ8TAL6 211 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 TCRBV21S2A2A0A5A6 115 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ZC3H12DA2A288 527 aaKnown RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 CDC14CA4D256 554 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 GLI4P10075 376 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 GABRA4P48169 554 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 PCBP4P57723 403 aaKnown RBP10.93□□□□□ -0.66
SYNPO-202ENST00000394243 SLC43A2Q8N370 569 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 NKAIN3Q8N8D7 197 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 ZNRF4Q8WWF5 429 aa10.93□□□□□ -0.66
SYNPO-202ENST00000394243 AQP7O14520 342 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 SMAD6O43541 496 aaKnown RBP10.92□□□□□ -0.66
SYNPO-202ENST00000394243 AIFM1O95831 613 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 ALOX5APP20292 161 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 TEAD1P28347 426 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 GLIPR1L1Q6UWM5 242 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CDCA4Q9BXL8 241 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 UBQLN3Q9H347 655 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 C8orf33Q9H7E9 229 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-202ENST00000394243 BCO1Q9HAY6 547 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 A4GALTQ9NPC4 353 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 RNASEK-C17orf49H0YIS7 233 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CD1EP15812 388 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CLPPQ16740 277 aaPredicted RBP10.92□□□□□ -0.66
SYNPO-202ENST00000394243 TMEM25Q86YD3 366 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 POM121Q96HA1 1249 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 SMIM7Q9BQ49 75 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CTDSP1Q9GZU7 261 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 BANF2Q9H503 90 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 SNRPGP15A8MWD9 76 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 YKT6O15498 198 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 OR4E1P0C645 316 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 OR1D4P47884 311 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 TPPP2P59282 170 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 ZP2Q05996 745 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CST6Q15828 149 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNPO-202ENST00000394243 TMEM268Q5VZI3 342 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 GABRG1Q8N1C3 465 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 OR6K3Q8NGY3 331 aa10.92□□□□□ -0.66
SYNPO-202ENST00000394243 CMTM2Q8TAZ6 248 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms