RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARSKQ6UWY0 536 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 FAM220AQ7Z4H9 259 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 SPEM1Q8N4L4 309 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 OR11G2Q8NGC1 345 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ADAMTS14Q8WXS8 1223 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 NSMAFQ92636 917 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ZFP64Q9NPA5 681 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 IGKV1D-43A0A0B4J1Z2 117 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 GDF9O60383 454 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ATF4P18848 351 aaPredicted RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 PGCP20142 388 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ERP29P30040 261 aaKnown RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 POLR2HP52434 150 aaKnown RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 BTBD16Q32M84 506 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 FAM69AQ5T7M9 428 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 C4orf45Q96LM5 186 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ELOVL3Q9HB03 270 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 HRASLSQ9HDD0 168 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 NUBP2Q9Y5Y2 271 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 A0A1W2PQM1 296 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF780AO75290 641 aaPredicted RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF254O75437 659 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 CCR9P51686 369 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ZP1P60852 638 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 EGR3Q06889 387 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 C19orf57Q0VDD7 668 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 MRPL28Q13084 256 aaKnown RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 SNTB2Q13425 540 aaKnown RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 HACD4Q5VWC8 232 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 GUSBP11Q6P575 273 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 Q7L0L9 218 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 MAMDC2Q7Z304 686 aaPredicted RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ANKRD37Q7Z713 158 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 CARFQ8N187 725 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 METTL21AQ8WXB1 218 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 MCHR2Q969V1 340 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 TMEM106AQ96A25 262 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 GUCD1Q96NT3 240 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 NIPAL2Q9H841 368 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 AKIRIN1Q9H9L7 192 aaPredicted RBP12.04□□□□□ -0.48
CCDC3-202ENST00000378839 ING3Q9NXR8 418 aa12.04□□□□□ -0.48
CCDC3-202ENST00000378839 EXPH5Q8NEV8 1989 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 LOC105371267A0A1B0GV96 52 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 SLC22A23A1A5C7 686 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MS4A18H0YCH9 400 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 H3BUI4 141 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 FMODQ06828 376 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MAB21L1Q13394 359 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MS4A18Q3C1V0 323 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 C9orf62Q8N4C0 152 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 DEDD2Q8WXF8 326 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MRPL48Q96GC5 212 aaKnown RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 SLA2Q9H6Q3 261 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 NARFLQ9H6Q4 476 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 PLEKHA1Q9HB21 404 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 TCF7L1Q9HCS4 588 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 VSX1Q9NZR4 365 aaPredicted RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MRPS17Q9Y2R5 130 aaKnown RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 A8MVM7 634 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 PDCD5O14737 125 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 TSPAN4O14817 238 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 EFNA2O43921 213 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 ITGA10O75578 1167 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 SLC25A12O75746 678 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 LCN1P31025 176 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 CENPAP49450 140 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 SLC17A1Q14916 467 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 PTCRAQ6ISU1 281 aaPredicted RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 TMPRSS12Q86WS5 348 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 GIMAP1Q8WWP7 306 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 CMTM3Q96MX0 182 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 OR8B4Q96RC9 309 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 WDR77Q9BQA1 342 aaPredicted RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 GTPBP2Q9BX10 602 aaKnown RBP12.03□□□□□ -0.48
CCDC3-202ENST00000378839 SEMA4CQ9C0C4 833 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 OR51J1Q9H342 316 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 TXNIPQ9H3M7 391 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 C12orf4Q9NQ89 552 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 TAS2R10Q9NYW0 307 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 MED11Q9P086 117 aa12.03□□□□□ -0.48
CCDC3-202ENST00000378839 HLA-DQA2P01906 255 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 FBXO45P0C2W1 286 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 FOXK1P85037 733 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 GRINAQ7Z429 371 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 ZNF676Q8N7Q3 588 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 DCBLD2Q96PD2 775 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 MED28Q9H204 178 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 NKIRAS2Q9NYR9 191 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 STMN3Q9NZ72 180 aa12.02□□□□□ -0.48
CCDC3-202ENST00000378839 TRIOBPQ9H2D6 2365 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 LOC101059948A0A1B0GTJ6 334 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 OR6C76A6NM76 312 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 MT-ATP6P00846 226 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 DCTDP32321 178 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 INPP5JQ15735 1006 aaPredicted RBP12.02□□□□□ -0.49
CCDC3-202ENST00000378839 RHBDD2Q6NTF9 364 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 MAMSTRQ6ZN01 415 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 BTN2A1Q7KYR7 527 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 CCDC28AQ8IWP9 274 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 DEFB123Q8N688 67 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms