RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NMD3Q96D46 503 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 MDFIQ99750 246 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 BPESC1Q9GZL8 116 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 TXNIPQ9H3M7 391 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 MAN2C1Q9NTJ4 1040 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 TMEM160Q9NX00 188 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 J3KTA2 159 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 FFAR1O14842 300 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 GSTA4O15217 222 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 ATP8B1O43520 1251 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF682O95780 498 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF16P17020 682 aaPredicted RBP18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 GIFP27352 417 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 TRAM2Q15035 370 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 TAF11Q15544 211 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 CHRFAM7AQ494W8 412 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 IFI44LQ53G44 452 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 ALG10Q5BKT4 473 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF786Q8N393 782 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC30A7Q8NEW0 376 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 GEMIN6Q8WXD5 167 aaKnown RBP18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 KCNK17Q96T54 332 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 FNDC11Q9BVV2 318 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 C1orf198Q9H425 327 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 RNF121Q9H920 327 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 SMURF2Q9HAU4 748 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 RHCGQ9UBD6 479 aa18.67■□□□□ 0.58
CCDC28B-201ENST00000373602 RTTNQ86VV8 2226 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 M0R233 179 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 NDUFAB1O14561 156 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 APEHP13798 732 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 MAKP20794 623 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 NUDT2P50583 147 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 MRPS34P82930 218 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 IQCCQ4KMZ1 466 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 LRP11Q86VZ4 500 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 NRMQ8IXM6 262 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 LRRC75AQ8NAA5 344 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 UBASH3BQ8TF42 649 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 SYT3Q9BQG1 590 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 MYLK2Q9H1R3 596 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 MS4A5Q9H3V2 200 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 SIAEQ9HAT2 523 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 REV1Q9UBZ9 1251 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 UGT2A1Q9Y4X1 527 aa18.66■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC22A23A1A5C7 686 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 PRSS23O95084 383 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC2A10O95528 541 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 SERPINA1P01009 418 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 PTHP01270 115 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 IGHMP01871 453 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 MMP7P09237 267 aaPredicted RBP18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 NR2C1P13056 603 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF23P17027 643 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 PRKCDQ05655 676 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 ANKDD1AQ495B1 522 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 RNF113BQ8IZP6 322 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 LRRC18Q8N456 261 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 PAQR4Q8N4S7 273 aaPredicted RBP18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 HSH2DQ96JZ2 352 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 ELAC2Q9BQ52 826 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 ALG12Q9BV10 488 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 TPK1Q9H3S4 243 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 ABCD2Q9UBJ2 740 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 CDC42EP3Q9UKI2 254 aa18.65■□□□□ 0.58
CCDC28B-201ENST00000373602 IGKV1D-43A0A0B4J1Z2 117 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 SNAP29O95721 258 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 SAGP10523 405 aaPredicted RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 CCL2P13500 99 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 CTXN1P60606 82 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 RPL27P61353 136 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 PLP2Q04941 152 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 FMODQ06828 376 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 TOP3AQ13472 1001 aaPredicted RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 FHL1Q13642 323 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 SLC25A47Q6Q0C1 308 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 FKBP9P1Q75LS8 142 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 RBM15BQ8NDT2 890 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 OR1J2Q8NGS2 313 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 ACOT11Q8WXI4 607 aaPredicted RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 NABP1Q96AH0 204 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 MSI2Q96DH6 328 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 CDH20Q9HBT6 801 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 MYEF2Q9P2K5 600 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 ZNF346Q9UL40 294 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 FZR1Q9UM11 496 aa18.64■□□□□ 0.57
CCDC28B-201ENST00000373602 TRAV27A0A087WT01 109 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 A0A087WUU8 490 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 IQCMA0A1B0GVH7 501 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 GMNCA6NCL1 334 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 EFCAB9A8MZ26 197 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 LMX1BO60663 402 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM157BP0CG42 384 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 CDAP32320 146 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 ALDH3B1P43353 468 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 SLC9A3P48764 834 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 SEC24CP53992 1094 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 PSME3P61289 254 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 CD47Q08722 323 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 TBC1D28Q2M2D7 210 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms