RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TNFRSF4P43489 277 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 DLX5P56178 289 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 RBMS2Q15434 407 aaKnown RBP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SLC6A19Q695T7 634 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CMKLR1Q99788 373 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 STEAP1Q9UHE8 339 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 NPTNQ9Y639 398 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 MPZL1O95297 269 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 THEGLP0DJG4 465 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CALCBP10092 127 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 EIF1AXP47813 144 aaKnown RBP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SPOCK1Q08629 439 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CFAP77Q6ZQR2 320 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 MARCH3Q86UD3 253 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CD163Q86VB7 1156 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 STPG2Q8N412 459 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 FAM160A2Q8N612 972 aaPredicted RBP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 TSLPQ969D9 159 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 KLHL15Q96M94 604 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 MFFQ9GZY8 342 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 PLEKHA1Q9HB21 404 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 FBXL3Q9UKT7 428 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 YBX2Q9Y2T7 364 aaKnown RBP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 FITM1A5D6W6 292 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 GGT3PA6NGU5 568 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF264O43296 627 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CTAG2O75638 210 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SLC25A12O75746 678 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 UTS2O95399 124 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SEMA4FO95754 770 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF28P17035 718 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 ACHEP22303 614 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 GPR3P46089 330 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 ELFN2Q5R3F8 820 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM81Q6P7N7 255 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 LRFN4Q6PJG9 635 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SHISA6Q6ZSJ9 500 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 KRT77Q7Z794 578 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SDR16C5Q8N3Y7 309 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 OR2AK2Q8NG84 335 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 ELSPBP1Q96BH3 223 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 FAM3DQ96BQ1 224 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 PDCD10Q9BUL8 212 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 OPN4Q9UHM6 478 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 EPOPA6NHQ4 379 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 PNPP00491 289 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 AMY2AP04746 511 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 MST1P26927 711 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 GFERP55789 205 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 ZP2Q05996 745 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 DLX2Q07687 328 aaPredicted RBP10.98□□□□□ -0.65
CLIP3-201ENST00000360535 CSRP2Q16527 193 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 NHLRC3Q5JS37 347 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 ELP2Q6IA86 826 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 TSSK4Q6SA08 328 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 GSG1LQ6UXU4 331 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM184AQ6ZMB5 413 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 TTLL10Q6ZVT0 673 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 FAM122BQ7Z309 247 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 BIVMQ86UB2 503 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 FAM46BQ96A09 425 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 RADILQ96JH8 1075 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 DMRTA2Q96SC8 542 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 TINAGL1Q9GZM7 467 aaPredicted RBP10.98□□□□□ -0.65
CLIP3-201ENST00000360535 SEMA6CQ9H3T2 930 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 POFUT1Q9H488 388 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 UBQLN4Q9NRR5 601 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 MED11Q9P086 117 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 PIAS3Q9Y6X2 628 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 SPAG17Q6Q759 2223 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 NPIPB9F8W1W9 429 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 XRCC3O43542 346 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 SULT1B1O43704 296 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 NMBP08949 121 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 ALOX5APP20292 161 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 KIR3DL2P43630 455 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 RAB11BQ15907 218 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 GLYATL3Q5SZD4 288 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 NKAIN2Q5VXU1 208 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 OR4S1Q8NGB4 309 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF417Q8TAU3 575 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 ST8SIA4Q92187 359 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 GABRG3Q99928 467 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 OR11A1Q9GZK7 315 aa10.98□□□□□ -0.65
CLIP3-201ENST00000360535 MTIF3Q9H2K0 278 aaKnown RBP10.98□□□□□ -0.65
CLIP3-201ENST00000360535 DHCR7Q9UBM7 475 aaKnown RBP10.98□□□□□ -0.65
CLIP3-201ENST00000360535 H3BUI4 141 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 H7C417 338 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 KCNAB3O43448 404 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ICOSLGO75144 302 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 WNT11O96014 354 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PLATP00750 562 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 NR0B1P51843 470 aaKnown RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PSMD4P55036 377 aaKnown RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ADAM8P78325 824 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 TAF13Q15543 124 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 DMRTC1Q5HYR2 192 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF684Q5T5D7 378 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 STEAP1BQ6NZ63 245 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ATG4DQ86TL0 474 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms