RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RCE1Q9Y256 329 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 ANXA2P2A6NMY6 339 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CENPBD1B2RD01 187 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 FTCDNL1E5RQL4 147 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 FABP7O15540 132 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 OR2T1O43869 369 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 GMDSO60547 372 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 KRT33AO76009 404 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 TIAF1O95411 115 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 ANXA2P07355 339 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CSRP1P21291 193 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 SDHBP21912 280 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 ARRB1P49407 418 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 BLVRAP53004 296 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 TMEM69Q5SWH9 247 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CD276Q5ZPR3 534 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 SLC18B1Q6NT16 456 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 MISPQ8IVT2 679 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF679Q8IYX0 411 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 DEDD2Q8WXF8 326 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 PHF21AQ96BD5 680 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 KLK11Q9UBX7 282 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CPAMD8Q8IZJ3 1885 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 IL11P20809 199 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 MELKQ14680 651 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 BTBD16Q32M84 506 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 NKAIN1Q4KMZ8 207 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 TMEM255AQ5JRV8 349 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 C5orf46Q6UWT4 87 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 EID2Q8N6I1 236 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 OR8K3Q8NH51 312 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 OR56B4Q8NH76 319 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 TMEM234Q8WY98 164 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 HLA-CQ95604 372 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 C8orf44Q96CB5 159 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 HYLS1Q96M11 299 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 H0YC42 278 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF780AO75290 641 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ECDO95905 644 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 DCNP07585 359 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 HEXBP07686 556 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 SPARCP09486 303 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 HLA-DOBP13765 273 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ROM1Q03395 351 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 CACNA1CQ13936 2221 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ST3GAL2Q16842 350 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 TEX30Q5JUR7 227 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 SFRP4Q6FHJ7 346 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 KDM8Q8N371 416 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 RNF128Q8TEB7 428 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ACTR6Q9GZN1 396 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 EMC7Q9NPA0 242 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 SUSD2Q9UGT4 822 aa18.74■□□□□ 0.59
CCDC88B-203ENST00000359902 ANKUB1A6NFN9 424 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 PNPP00491 289 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 PTHLHP12272 177 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 CXCL3P19876 107 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 C17orf67Q0P5P2 114 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 GIMAP1Q8WWP7 306 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 OR6C1Q96RD1 312 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 STMN3Q9NZ72 180 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 SLC22A13Q9Y226 551 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 MNDAP41218 407 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 SNRPD2P62316 118 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 ADAM8P78325 824 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 ACY1Q03154 408 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 PLA2G7Q13093 441 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 BEST4Q8NFU0 473 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 GRPEL2Q8TAA5 225 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 ST8SIA1Q92185 356 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 PPP1R14AQ96A00 147 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 MS4A3Q96HJ5 214 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 PRO3102Q9H379 93 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 STEAP1Q9UHE8 339 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF222Q9UK12 451 aa18.73■□□□□ 0.59
CCDC88B-203ENST00000359902 TMEM265A0A087WTH1 108 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 CPED1A4D0V7 1026 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 MS4A18H0YCH9 400 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 SOX1O00570 391 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 TMIGD3P0DMS9 266 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 AP3S2P59780 193 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 MRPS10P82664 201 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 MS4A18Q3C1V0 323 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 GUSBP11Q6P575 273 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 OR11G2Q8NGC1 345 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 NXPE2Q96DL1 559 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 ARL5BQ96KC2 179 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 C20orf85Q9H1P6 137 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 HSPB11Q9Y547 144 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 TMEM200CA6NKL6 621 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 ALOX12BO75342 701 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 SYPP08247 313 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 TAS2R20P59543 309 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 SQSTM1Q13501 440 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 OR6S1Q8NH40 331 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 NUBPLQ8TB37 319 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 TSEN15Q8WW01 171 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 HGDQ93099 445 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 ABHD6Q9BV23 337 aa18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 NKIRAS2Q9NYR9 191 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms