RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SCARB2Q14108 478 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 CEP85LQ5SZL2 805 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 LRIF1Q5T3J3 769 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 LRFN4Q6PJG9 635 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 SLC2A7Q6PXP3 512 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 WDR88Q6ZMY6 472 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 HIST3H2AQ7L7L0 130 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 COMTD1Q86VU5 262 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 ARMC8Q8IUR7 673 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 WDFY1Q8IWB7 410 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 PAQR4Q8N4S7 273 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 ANKRD42Q8N9B4 389 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 RBM15BQ8NDT2 890 aaKnown RBP12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 OR4K5Q8NGD3 323 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 HIST1H2ACQ93077 130 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 GPA33Q99795 319 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 GAL3ST1Q99999 423 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 EGLN1Q9GZT9 426 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 KCNN2Q9H2S1 579 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 SLCO1B3Q9NPD5 702 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 NANSQ9NR45 359 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 PCDHGB1Q9Y5G3 927 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 PLSCR5A0PG75 271 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 EVPLLA8MZ36 301 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 CENPBD1B2RD01 187 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 LRRN3E7EW58 273 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 QDPRP09417 244 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 LIPAP38571 399 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 MRPL19P49406 292 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 HSF2Q03933 536 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF718Q3SXZ3 478 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 LINC00114Q6XXX2 140 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ICA1LQ8NDH6 482 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 HIPK4Q8NE63 616 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ST7LQ8TDW4 575 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 POP5Q969H6 163 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 TSPAN32Q96QS1 320 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 OR52B2Q96RD2 323 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 SLC19A3Q9BZV2 496 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 CYSLTR2Q9NS75 346 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 CGGBP1Q9UFW8 167 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF229Q9UJW7 825 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ANGPT4Q9Y264 503 aa12.56□□□□□ -0.4
CCDC88B-201ENST00000301897 ARHGAP32A7KAX9 2087 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TPST2O60704 377 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 FOXH1O75593 365 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 PGA4P0DJD7 388 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 PGA3P0DJD8 388 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 CCL2P13500 99 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 GCH1P30793 250 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 CLRN1P58418 232 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF74Q16587 644 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TSTQ16762 297 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 ZMAT1Q5H9K5 638 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TTC33Q6PID6 262 aaPredicted RBP12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 MAVSQ7Z434 540 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 OR1J1Q8NGS3 322 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 CCL17Q92583 94 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 DVL3Q92997 716 aaPredicted RBP12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 MPP4Q96JB8 637 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 DIRC2Q96SL1 478 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 MCHR1Q99705 422 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 PARD6BQ9BYG5 372 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 OR51B6Q9H340 312 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TAS2R5Q9NYW4 299 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 SLC25A37Q9NYZ2 338 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 STX18Q9P2W9 335 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 EIF3KQ9UBQ5 218 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 OPN4Q9UHM6 478 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TRIM33Q9UPN9 1127 aa12.55□□□□□ -0.4
CCDC88B-201ENST00000301897 TMEM120BA0PK00 339 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 H3BSA7 217 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF500O60304 480 aaPredicted RBP12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 CH25HO95992 272 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 ADH4P08319 380 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 GPX2P18283 190 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 PRTN3P24158 256 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 ATP4BP51164 291 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 SLC18A1P54219 525 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 ERVS71-1P61550 626 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 HIST3H3Q16695 136 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 BLOC1S3Q6QNY0 202 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 DOK3Q7L591 496 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 MSRB3Q8IXL7 192 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 SYT14Q8NB59 555 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 SIAEQ9HAT2 523 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 NKIRAS1Q9NYS0 192 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 ZDHHC8Q9ULC8 765 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 PPIAL4AQ9Y536 164 aa12.54□□□□□ -0.4
CCDC88B-201ENST00000301897 NOTCH1P46531 2555 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 TANC2Q9HCD6 1990 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 A0A1W2PRG6 482 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 ISPDA4D126 451 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 POM121CA8CG34 1229 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 MCIDASD6RGH6 385 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NR2C1P13056 603 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 IL13RA1P78552 427 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 LCN2P80188 198 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 MELKQ14680 651 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 TUSC1Q2TAM9 212 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms