RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RIMKLAQ8IXN7 391 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 SELENOIQ9C0D9 397 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 TM7SF3Q9NS93 570 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 GAR1Q9NY12 217 aaKnown RBP9.12□□□□□ -0.95
COL6A3-201ENST00000295550 A6NL46 340 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 MTCP1P56278 107 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF91Q05481 1191 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 MDGA2Q7Z553 956 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 ADGRG3Q86Y34 549 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 NHLRC2Q8NBF2 726 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 SDK2Q58EX2 2172 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 NME2P1O60361 137 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 GLSO94925 669 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-201ENST00000295550 PLK5Q496M5 336 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 LRRC18Q8N456 261 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 SEC22CQ9BRL7 303 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 VN1R3Q9BXE9 311 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35D1Q9NTN3 355 aa9.12□□□□□ -0.95
COL6A3-201ENST00000295550 PTHP01270 115 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 OR8U8P0C7N1 319 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 GPX2P18283 190 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ELAVL4P26378 380 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ECI1P42126 302 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TBPL2Q6SJ96 375 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SGIP1Q9BQI5 828 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PSME4Q14997 1843 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PHF1O43189 567 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 IGLV3-27P01718 113 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 NME1P15531 152 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ISL1P61371 349 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PHLDA2Q53GA4 152 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 OR8G2PQ6IF36 304 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 OR7E24Q6IFN5 339 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 LIPHQ8WWY8 451 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ADIPOR1Q96A54 375 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SEMA6CQ9H3T2 930 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 LOC100289279A0A1B0GTE1 492 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 C17orf105B2RV13 164 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 FURINP09958 794 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DEFA4P12838 97 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 USF1P22415 310 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CARD18P57730 90 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TNFRSF17Q02223 184 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PARS2Q7L3T8 475 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ADGRE4PQ86SQ3 457 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 BLACEA4D250 179 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 FUCA1P04066 466 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DDOSTP39656 456 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 HOXC5Q00444 222 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SNTB1Q13884 538 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 OXA1LQ15070 435 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 HNRNPA1L2Q32P51 320 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TRIM61Q5EBN2 209 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TOR2AQ5JU69 321 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM123Q8N131 208 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SLC38A5Q8WUX1 472 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DDOQ99489 341 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PLEK2Q9NYT0 353 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DIMT1Q9UNQ2 313 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 BOLA1Q9Y3E2 137 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 M0QYG6 137 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SSSCA1O60232 199 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 GASTP01350 101 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SCGB1C2P0DMR2 95 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PIPP12273 146 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 HLA-FP30511 346 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CHRNEQ04844 493 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM201Q5SNT2 666 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 LRRC56Q8IYG6 542 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SLC39A11Q8N1S5 342 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 OR4N2Q8NGD1 307 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DVL3Q92997 716 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 F10P00742 488 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CALCRP30988 508 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 GABRA2P47869 451 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 HSF1Q00613 529 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CATR1Q13166 79 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CTU2Q2VPK5 515 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SLC24A4Q8NFF2 622 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TANKQ92844 425 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 RPL3LQ92901 407 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 LMF2Q9BU23 707 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SRRQ9GZT4 340 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 GNB4Q9HAV0 340 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SPACA1Q9HBV2 294 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SLC6A20Q9NP91 592 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 PCDHB10Q9UN67 800 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 DOCK3Q8IZD9 2030 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 FAM183AA6NL82 134 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 C6orf132Q5T0Z8 1188 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 FRMPD2BQ6IN97 320 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 LPCAT3Q6P1A2 487 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TAS1R1Q7RTX1 841 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 HSD17B8Q92506 261 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 R3HDMLQ9H3Y0 253 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 EPHX3Q9H6B9 360 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 AK3Q9UIJ7 227 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TARM1B6A8C7 271 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 RAF1P04049 648 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 SLC36A2Q495M3 483 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms