RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LAMTOR1Q6IAA8 161 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 TMEM71Q6P5X7 295 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 WDFY1Q8IWB7 410 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 DND1Q8IYX4 353 aaKnown RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 GPR148Q8TDV2 347 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 DCBLD2Q96PD2 775 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 MNTQ99583 582 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SLA2Q9H6Q3 261 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SUSD2Q9UGT4 822 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SRPK3Q9UPE1 567 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 VDAC3Q9Y277 283 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SLC22A23A1A5C7 686 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SHISA8B8ZZ34 492 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SOX1O00570 391 aaPredicted RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 FABP7O15540 132 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 CXCL3P19876 107 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ADAM8P78325 824 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 SLC17A1Q14916 467 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 GLB1L2Q8IW92 636 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 NFAM1Q8NET5 270 aaPredicted RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 DACT3Q96B18 629 aaPredicted RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 OR51J1Q9H342 316 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 MED11Q9P086 117 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ZNF222Q9UK12 451 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 FLVCR2Q9UPI3 526 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 H2AFB2P0C5Z0 115 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 STOMP27105 288 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 TNK1Q13470 666 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 OR7E24Q6IFN5 339 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ARSKQ6UWY0 536 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 TSEN15Q8WW01 171 aaKnown RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 GIMAP1Q8WWP7 306 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 PIGKQ92643 395 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 S100A16Q96FQ6 103 aaKnown RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 TGIF2Q9GZN2 237 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 VSX1Q9NZR4 365 aaPredicted RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 RALGAPA1Q6GYQ0 2036 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 A0A1W2PQM1 296 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 FTCDNL1E5RQL4 147 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 FBXO45P0C2W1 286 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 CALCBP10092 127 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 CCR9P51686 369 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 MFGE8Q08431 387 aaPredicted RBP18.05■□□□□ 0.48
VPS53-201ENST00000291074 DYRK1AQ13627 763 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 GSG1Q2KHT4 349 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 FAAP20Q6NZ36 180 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 CLDN23Q96B33 292 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 GTPBP2Q9BX10 602 aaKnown RBP18.05■□□□□ 0.48
VPS53-201ENST00000291074 SEMA4CQ9C0C4 833 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 KCNK15Q9H427 330 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 HRASLSQ9HDD0 168 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 ANKRD34BA5PLL1 514 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 GABARAPH6UMI1 98 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 DHPSP49366 369 aaPredicted RBP18.05■□□□□ 0.48
VPS53-201ENST00000291074 ART1P52961 327 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 SLC26A5P58743 744 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 FMODQ06828 376 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 RASGEF1BQ0VAM2 473 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 ST3GAL2Q16842 350 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 SLC22A10Q63ZE4 541 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 BTN2A1Q7KYR7 527 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 MIB2Q96AX9 1013 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 KLHL9Q9P2J3 617 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 COA3Q9Y2R0 106 aaPredicted RBP18.05■□□□□ 0.48
VPS53-201ENST00000291074 HSPB11Q9Y547 144 aa18.05■□□□□ 0.48
VPS53-201ENST00000291074 TRBV11-1A0A0K0K1C0 115 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 PHYHO14832 338 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 DOK2O60496 412 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 SCRG1O75711 98 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 KRT33AO76009 404 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 CCKBRP32239 447 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 OR7A5Q15622 319 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 PAPD4Q6PIY7 484 aaKnown RBP18.04■□□□□ 0.48
VPS53-201ENST00000291074 C8orf44Q96CB5 159 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 HAVCR1Q96D42 359 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 C7orf50Q9BRJ6 194 aaKnown RBP18.04■□□□□ 0.48
VPS53-201ENST00000291074 C20orf85Q9H1P6 137 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 PLEKHA1Q9HB21 404 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 COPZ2Q9P299 210 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 IGLV3-12A0A075B6K2 115 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 ALOX12BO75342 701 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 CCL7P80098 99 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 FAM69BQ5VUD6 431 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 SLC18B1Q6NT16 456 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 RABEPKQ7Z6M1 372 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 ZNF679Q8IYX0 411 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 STK35Q8TDR2 534 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 DEDD2Q8WXF8 326 aa18.04■□□□□ 0.48
VPS53-201ENST00000291074 MED12Q93074 2177 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 DMDP11532 3685 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 LY6G6EA0A0G2JKS1 128 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 TMEM200CA6NKL6 621 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 KHDRBS3O75525 346 aaKnown RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 EIF2B1Q14232 305 aaKnown RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 FCAMRQ8WWV6 532 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 MCHR2Q969V1 340 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 NXPE2Q96DL1 559 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 OR2M2Q96R28 347 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 ABHD6Q9BV23 337 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 PRO3102Q9H379 93 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms