RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HPGDP15428 266 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 RAB38P57729 211 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 AP3S2P59780 193 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 OR7E24Q6IFN5 339 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 ZCCHC12Q6PEW1 402 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 C11orf88Q6PI97 169 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SEZ6L2Q6UXD5 910 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 BAIAP2L2Q6UXY1 529 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 Q6ZS52 159 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 TAF8Q7Z7C8 310 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 OR6V1Q8N148 313 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 OR51S1Q8NGJ8 323 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 OR6M1Q8NGM8 313 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 KTI12Q96EK9 354 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 NMNAT2Q9BZQ4 307 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 NRSN2Q9GZP1 204 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 PTTG3PQ9NZH4 202 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SLC22A13Q9Y226 551 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 ASCC3Q8N3C0 2202 aaKnown RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 RP1P56715 2156 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 A0A0J9YY10 115 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 RAB19A4D1S5 217 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 B4DGG1 531 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SUSD5O60279 629 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SPDEFO95238 335 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 GTF2F2P13984 249 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 CCR5P51681 352 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 B3GNTL1Q67FW5 361 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 STPG2Q8N412 459 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 PLPP7Q8NBV4 271 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 RELL2Q8NC24 303 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 TSEN15Q8WW01 171 aaKnown RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 RBM14Q96PK6 669 aaKnown RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 SLITRK2Q9H156 845 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 TAS2R5Q9NYW4 299 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 KCNG2Q9UJ96 466 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SLCO1B1Q9Y6L6 691 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 hCG_1807616A0A1W2PRN6 198 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 ACOT7O00154 380 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 CTNSO60931 367 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 RBBP9O75884 186 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 IGF2P01344 180 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 APOC1P02654 83 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SELLP14151 372 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 CCKBRP32239 447 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 HLXQ14774 488 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 NHLRC3Q5JS37 347 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 ZNF626Q68DY1 528 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 TMEM205Q6UW68 189 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 MED25Q71SY5 747 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 MDGA2Q7Z553 956 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 TMED4Q7Z7H5 227 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 LRRTM1Q86UE6 522 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 MUC20Q8N307 709 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 BOLLQ8N9W6 283 aaKnown RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 TNFAIP8L1Q8WVP5 186 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 MIB2Q96AX9 1013 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SLC25A36Q96CQ1 311 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 DGAT2Q96PD7 388 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 LPAR4Q99677 370 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 SHARPINQ9H0F6 387 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 OR10A5Q9H207 317 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 PLEKHA1Q9HB21 404 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 AKAP7Q9P0M2 348 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 FBXL2Q9UKC9 423 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 TMEM184BQ9Y519 407 aaPredicted RBP9.11□□□□□ -0.95
LIG3-201ENST00000262327 KCNMB2Q9Y691 235 aa9.11□□□□□ -0.95
LIG3-201ENST00000262327 LOC100509620A0A075B734 347 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 FOXS1O43638 330 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 PRAF2O60831 178 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 NDUFB6O95139 128 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 CD3DP04234 171 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 MAZP56270 477 aaKnown RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 RPL18Q07020 188 aaKnown RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 UBXN2BQ14CS0 331 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 C4orf46Q504U0 113 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 MESTQ5EB52 335 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 ZNF684Q5T5D7 378 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 TFAP2EQ6VUC0 442 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 PRSS35Q8N3Z0 413 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 FAM71CQ8NEG0 241 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 TSTD1Q8NFU3 115 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 ZNF563Q8TA94 476 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 DUSP19Q8WTR2 217 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 CCDC74AQ96AQ1 378 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 SGK3Q96BR1 496 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 MMABQ96EY8 250 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 NPAS1Q99742 590 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 RTN4RQ9BZR6 473 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 PRTFDC1Q9NRG1 225 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 GRHPRQ9UBQ7 328 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 RTTNQ86VV8 2226 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 ZNF217O75362 1048 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 GLSO94925 669 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 SEMA4FO95754 770 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 NMBP08949 121 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 HNRNPA2B1P22626 353 aaKnown RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 MST1P26927 711 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 SORDQ00796 357 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 FLI1Q01543 452 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms