RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ELSPBP1Q96BH3 223 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 ACER3Q9NUN7 267 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 NDRG4Q9ULP0 352 aaKnown RBP12.46□□□□□ -0.41
SF3A1-201ENST00000215793 CHD4Q14839 1912 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 CLEC2LP0C7M8 214 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 PRKACAP17612 351 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 ADPRHP54922 357 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 BTG1P62324 171 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 TEKQ02763 1124 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 EBPQ15125 230 aaKnown RBP12.46□□□□□ -0.41
SF3A1-201ENST00000215793 DUSP6Q16828 381 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 SOHLH1Q5JUK2 328 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 NKAIN2Q5VXU1 208 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 ANGPTL5Q86XS5 388 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 SLC35A4Q96G79 324 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 PRR14Q9BWN1 585 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 BARHL1Q9BZE3 327 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 CLN5O75503 358 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 GSTP1P09211 210 aaKnown RBP12.46□□□□□ -0.41
SF3A1-201ENST00000215793 AKR1C1Q04828 323 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM71Q6P5X7 295 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 NKAIN4Q8IVV8 208 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 PLPP7Q8NBV4 271 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 FAM71CQ8NEG0 241 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 SPACA1Q9HBV2 294 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 NECAP2Q9NVZ3 263 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 PUS1Q9Y606 427 aaKnown RBP eCLIP12.46□□□□□ -0.41
SF3A1-201ENST00000215793 KIR2DS1A0A191URI9 304 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 PHF1O43189 567 aaPredicted RBP12.46□□□□□ -0.42
SF3A1-201ENST00000215793 CD22P20273 847 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 KIR2DS4P43632 304 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 HOXA1P49639 335 aaPredicted RBP12.46□□□□□ -0.42
SF3A1-201ENST00000215793 EPHA5P54756 1037 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 KIR2DS1Q14954 304 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 CD276Q5ZPR3 534 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 LYSMD2Q8IV50 215 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 MBNL1Q9NR56 388 aaKnown RBP12.46□□□□□ -0.42
SF3A1-201ENST00000215793 PCDHGA5Q9Y5G8 931 aa12.46□□□□□ -0.42
SF3A1-201ENST00000215793 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 C4orf47A7E2U8 309 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 HSPB6O14558 160 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SPINT2O43291 252 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 PIP5K1CO60331 668 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 WNT11O96014 354 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 RPL34P49207 117 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 FAPQ12884 760 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TRMT12Q53H54 448 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 CREB3L2Q70SY1 520 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 DOK3Q7L591 496 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 RTN4RL1Q86UN2 441 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 INTS12Q96CB8 462 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 C20orf85Q9H1P6 137 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TMEM202A6NGA9 273 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 ZNF705GA8MUZ8 300 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SELENOFO60613 162 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 CALCBP10092 127 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 LIPNQ5VXI9 398 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 OGFOD3Q6PK18 319 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 OR52A5Q9H2C5 316 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 FKRPQ9H9S5 495 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 BCO1Q9HAY6 547 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 HIF1ANQ9NWT6 349 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 CHRNA9Q9UGM1 479 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 DUSP13Q9UII6 198 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 RPS19P39019 145 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 PMPCAQ10713 525 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 BTN1A1Q13410 526 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 EMC4Q5J8M3 183 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SMIM15Q7Z3B0 74 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 PIGTQ969N2 578 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SLC25A46Q96AG3 418 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 APH1AQ96BI3 265 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SCPEP1Q9HB40 452 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 WASH6PQ9NQA3 447 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TBC1D29Q9UFV1 150 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 COA3Q9Y2R0 106 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 MRPS2Q9Y399 296 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 A0A1W2PR48 441 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 M0QYG6 137 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 DFFBO76075 338 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TRAPPC2P0DI81 140 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TRAPPC2BP0DI82 140 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 ANXA7P20073 488 aaKnown RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 POU3F3P20264 500 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-201ENST00000215793 Q6ZNX1 250 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 CELF2-AS1Q8N7Q2 184 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 SEH1LQ96EE3 360 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 NRSN2Q9GZP1 204 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 TWSG1Q9GZX9 223 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 CMC2Q9NRP2 79 aa12.45□□□□□ -0.42
SF3A1-201ENST00000215793 KIAA0100Q14667 2235 aaKnown RBP12.44□□□□□ -0.42
SF3A1-201ENST00000215793 F6UZH7 168 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 GABARAPH6UMI1 98 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 HMGN4O00479 90 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 DOK2O60496 412 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 IL3RAP26951 378 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 BATFQ16520 125 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 OLIG3Q7RTU3 272 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 OR51A2Q8NGJ7 313 aa12.44□□□□□ -0.42
SF3A1-201ENST00000215793 PDCD1LG2Q9BQ51 273 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms