RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DTX1Q86Y01 620 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 OR6M1Q8NGM8 313 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 RBPMSQ93062 196 aaKnown RBP9.65□□□□□ -0.87
USP28-201ENST00000003302 NKD1Q969G9 470 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 FAM46BQ96A09 425 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 TRIM2Q9C040 744 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 TCF7L1Q9HCS4 588 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 TMEM131Q92545 1883 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 GLSO94925 669 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 NDUFB6O95139 128 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 FNTBP49356 437 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ACTA2P62736 377 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ACTG2P63267 376 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 INPP5JQ15735 1006 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 COL28A1Q2UY09 1125 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 C2orf76Q3KRA6 126 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 Q499Y3 187 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 FAM69AQ5T7M9 428 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 OR52W1Q6IF63 320 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 CDC20BQ86Y33 519 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 NSMAFQ92636 917 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 SLC22A18Q96BI1 424 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ARL6Q9H0F7 186 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 C17orf105B2RV13 164 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 CDC40O60508 579 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP28-201ENST00000003302 ILF3Q12906 894 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP28-201ENST00000003302 SLC22A10Q63ZE4 541 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 FGD2Q7Z6J4 655 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 GPAT4Q86UL3 456 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 MEIOBQ8N635 442 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ZNF676Q8N7Q3 588 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 MIB2Q96AX9 1013 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 SEMA6CQ9H3T2 930 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 MRPL39Q9NYK5 338 aaKnown RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 SVEP1Q4LDE5 3571 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ELOA3DA6NLF2 546 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 CD14P08571 375 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 KLK2P20151 261 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 NFYAP23511 347 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 ARHGEF6Q15052 776 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ELOA3BQ3SY89 546 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 POMGNT2Q8NAT1 580 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ELOA3Q8NG57 546 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 OR2I1PQ8NGU4 316 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ROBO4Q8WZ75 1007 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 TMEM106CQ9BVX2 250 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 HIF3AQ9Y2N7 669 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 HEBP2Q9Y5Z4 205 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 SHANK1Q9Y566 2161 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 TGM6O95932 706 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 SPOCK1Q08629 439 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 UBXN2BQ14CS0 331 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ZNF660Q6AZW8 331 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 RGS7BPQ6MZT1 257 aaPredicted RBP9.64□□□□□ -0.87
USP28-201ENST00000003302 C3P1Q6ZMU1 363 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 IDO2Q6ZQW0 420 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 TGM7Q96PF1 710 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 LRRC61Q9BV99 259 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 ELOVL3Q9HB03 270 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 PRTFDC1Q9NRG1 225 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 GMEB2Q9UKD1 530 aa9.64□□□□□ -0.87
USP28-201ENST00000003302 A0A1B0GUH1 482 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 TMEM235A6NFC5 223 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 L7N2F9 121 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 ARPC3O15145 178 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 HLA-DQA2P01906 255 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 CD53P19397 219 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 RPL13AP3Q6NVV1 102 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 LANCL3Q6ZV70 420 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 C19orf47Q8N9M1 422 aaKnown RBP9.63□□□□□ -0.87
USP28-201ENST00000003302 OR1J4Q8NGS1 313 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 FBXW5Q969U6 566 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 S100A16Q96FQ6 103 aaKnown RBP9.63□□□□□ -0.87
USP28-201ENST00000003302 NKX2-4Q9H2Z4 354 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 TAS2R4Q9NYW5 299 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 LAMP5Q9UJQ1 280 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 PIAS3Q9Y6X2 628 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 TRBV5-5A0A0J9YX44 114 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 C5orf63A6NC05 138 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 B8ZZF3 427 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 CTDSPLO15194 276 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 ART1P52961 327 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 SLC37A1P57057 533 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 PRTGQ2VWP7 1150 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 CFAP77Q6ZQR2 320 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 CD163Q86VB7 1156 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 OR1S1Q8NH92 325 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 SLC2A12Q8TD20 617 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 GPBAR1Q8TDU6 330 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 FOXQ1Q9C009 403 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 B3GNT4Q9C0J1 378 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 PLEKHA1Q9HB21 404 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 ADGRG4Q8IZF6 3080 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 MFSD2BA6NFX1 497 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 GGT3PA6NGU5 568 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 HCRTR2O43614 444 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 OR2A4O95047 310 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 SDHAP31040 664 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 ARHGAP40Q5TG30 622 aa9.63□□□□□ -0.87
USP28-201ENST00000003302 SLC35F3Q8IY50 421 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms