RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	IGLV1-36	A0A0B4J1U3	117 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	SMIM31	A0A1B0GVY4	71 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	TMEM129	A0AVI4	362 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	DCTN6	O00399	190 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	GPR171	O14626	319 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	KHDRBS3	O75525	346 aa	Known RBP	10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	SEC14L2	O76054	403 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	APOL3	O95236	402 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	OR2T7	P0C7T2	308 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PGA4	P0DJD7	388 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PGA3	P0DJD8	388 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	NR2C1	P13056	603 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ACTC1	P68032	377 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ACTA1	P68133	377 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	CAMK2D	Q13557	499 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	RAB39A	Q14964	217 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	HIST3H3	Q16695	136 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	LINC00303	Q3SY05	128 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	SYT6	Q5T7P8	510 aa	Predicted RBP	10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	SHF	Q7M4L6	423 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF367	Q7RTV3	350 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	LHFPL3	Q86UP9	236 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	WDFY1	Q8IWB7	410 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	OR2T27	Q8NH04	317 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PNPLA2	Q96AD5	504 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	TMIGD2	Q96BF3	282 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	SARAF	Q96BY9	339 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	COG8	Q96MW5	612 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	OR2M2	Q96R28	347 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	MYCBP	Q99417	103 aa	Predicted RBP	10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	CNN2	Q99439	309 aa	Known RBP	10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ARHGAP9	Q9BRR9	750 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PRRG4	Q9BZD6	226 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	FAM192A	Q9GZU8	254 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PRDM14	Q9GZV8	571 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	RACGAP1	Q9H0H5	632 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	RERGL	Q9H628	205 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	MARCH7	Q9H992	704 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	RNF122	Q9H9V4	155 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ERVK13-1	Q9NX77	482 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	CLEC2D	Q9UHP7	191 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	RCE1	Q9Y256	329 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	FLVCR1	Q9Y5Y0	555 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	CFAP47	Q6ZTR5	3102 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	CACNA1G	O43497	2377 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	ZFHX4	Q86UP3	3567 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	PRRC2C	Q9Y520	2896 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	IGKV3D-15	A0A087WSY6	115 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	MED19	A0JLT2	244 aa	Predicted RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	DAPL1	A0PJW8	107 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	OR14I1	A6ND48	311 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	C12orf71	A8MTZ7	269 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	FAM171A2	A8MVW0	826 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	MYL12B	O14950	172 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF432	O94892	652 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	INMT	O95050	263 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	PTH	P01270	115 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	LCK	P06239	509 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	MRPL3	P09001	348 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	LIMS3	P0CW19	117 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	LIMS4	P0CW20	117 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	CTLA4	P16410	223 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	PTGS2	P35354	604 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	DBP	Q10586	325 aa	Predicted RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	GALE	Q14376	348 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	RNPS1	Q15287	305 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC25A47	Q6Q0C1	308 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC16A9	Q7RTY1	509 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC35F2	Q8IXU6	374 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	KDF1	Q8NAX2	398 aa	Predicted RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF511	Q8NB15	262 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	NOXO1	Q8NFA2	376 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	OR10H4	Q8NGA5	316 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	OR13F1	Q8NGS4	319 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	RNF128	Q8TEB7	428 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	TMEM54	Q969K7	222 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	NMD3	Q96D46	503 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	MRPL48	Q96GC5	212 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF385A	Q96PM9	386 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	MNT	Q99583	582 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	YIPF3	Q9GZM5	350 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	GLTP	Q9NZD2	209 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	EMC3	Q9P0I2	261 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	KLHL9	Q9P2J3	617 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	LSM2	Q9Y333	95 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	CAB39	Q9Y376	341 aa	Predicted RBP	10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF175	Q9Y473	711 aa		10.46	□□□□□ -0.73
CLN6-223	ENST00000637823	ARHGAP21	Q5T5U3	1957 aa		10.46	□□□□□ -0.74
CLN6-223	ENST00000637823	NCOR2	Q9Y618	2525 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	SVIL	O95425	2214 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	ZNF724	A8MTY0	619 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	SELENOF	O60613	162 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	FAM87A	P0C7U9	286 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	PSMB9	P28065	219 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	CSNK1A1	P48729	337 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	ZNF133	P52736	654 aa	Predicted RBP	10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	GP2	P55259	537 aa	Known RBP	10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	WNT4	P56705	351 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	HSF2	Q03933	536 aa		10.45	□□□□□ -0.74
CLN6-223	ENST00000637823	GLO1	Q04760	184 aa		10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms