RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ARMCX4Q5H9R4 360 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 RNLSQ5VYX0 342 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 ZBTB46Q86UZ6 589 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 ACBD7Q8N6N7 88 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 ABHD3Q8WU67 409 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 TM9SF4Q92544 642 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 CRELD1Q96HD1 420 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 COG8Q96MW5 612 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 CNN2Q99439 309 aaKnown RBP17.89■□□□□ 0.46
CLN3-250ENST00000636839 FUNDC2Q9BWH2 189 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 ING1Q9UK53 422 aaPredicted RBP17.89■□□□□ 0.46
CLN3-250ENST00000636839 COA3Q9Y2R0 106 aaPredicted RBP17.89■□□□□ 0.46
CLN3-250ENST00000636839 DAPL1A0PJW8 107 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 IRGMA1A4Y4 181 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 A6NIZ1 184 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 MYL12BO14950 172 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 LRRTM2O43300 516 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 RAP1BP61224 184 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 RAP1AP62834 184 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 TMED1Q13445 227 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 MEP1BQ16820 701 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 PLEKHN1Q494U1 663 aaPredicted RBP17.89■□□□□ 0.45
CLN3-250ENST00000636839 SLC35D3Q5M8T2 416 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 Q6ZS92 163 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 ZNF485Q8NCK3 441 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 NSMAFQ92636 917 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 DTNBP1Q96EV8 351 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 MGLLQ99685 303 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 MND1Q9BWT6 205 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 FAM192AQ9GZU8 254 aa17.89■□□□□ 0.45
CLN3-250ENST00000636839 EXOSC1Q9Y3B2 195 aaKnown RBP17.89■□□□□ 0.45
CLN3-250ENST00000636839 KIAA1549Q9HCM3 1950 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 MKRN2OSH3BPM6 223 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 LALBAP00709 142 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PGA4P0DJD7 388 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PGA3P0DJD8 388 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 TGFBR2P37173 567 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PLA2G5P39877 138 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 CXADRP78310 365 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 LRRC69Q6ZNQ3 347 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ERI1Q8IV48 349 aaKnown RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 HTRA1Q92743 480 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 DGCR14Q96DF8 476 aaKnown RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 YIPF6Q96EC8 236 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ZHX1-C8orf76Q96EF9 292 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 OPALINQ96PE5 141 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ZNF71Q9NQZ8 489 aaPredicted RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 CHCHD3Q9NX63 227 aaKnown RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 TP53TG5Q9Y2B4 290 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 KLHDC2Q9Y2U9 406 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PNMA8CA0A1B0GUJ8 204 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ZNF716A6NP11 495 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PRR32B1ATL7 298 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 NPIPA2E9PIF3 369 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 NPIPA3F8WFD2 350 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 M0R3G1 203 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PHYHD1Q5SRE7 291 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ZNF367Q7RTV3 350 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 SLC35F2Q8IXU6 374 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 TIGD4Q8IY51 512 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 ZFP41Q8N8Y5 198 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 OR6X1Q8NH79 312 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 SPRYD4Q8WW59 207 aaPredicted RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 FCGR1BQ92637 280 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 SLC25A44Q96H78 314 aaPredicted RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 ALG8Q9BVK2 526 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 MRPL22Q9NWU5 206 aaKnown RBP17.88■□□□□ 0.45
CLN3-250ENST00000636839 FKBP7Q9Y680 259 aa17.88■□□□□ 0.45
CLN3-250ENST00000636839 PSMD9O00233 223 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 AQP8O94778 261 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 HLA-DQA2P01906 255 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 SELENOPP49908 381 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 TMPRSS3P57727 454 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 TSTQ16762 297 aaKnown RBP17.87■□□□□ 0.45
CLN3-250ENST00000636839 LCN1P1Q5VSP4 162 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 FNDC9Q8TBE3 224 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 ISOC1Q96CN7 298 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 NMD3Q96D46 503 aaKnown RBP17.87■□□□□ 0.45
CLN3-250ENST00000636839 WDYHV1Q96HA8 205 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 SNX18Q96RF0 628 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 ZMIZ1Q9ULJ6 1067 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 LHX6Q9UPM6 363 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 MOKQ9UQ07 419 aa17.87■□□□□ 0.45
CLN3-250ENST00000636839 TMEM129A0AVI4 362 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 DNPH1O43598 174 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 VAMP5O95183 116 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ACTL6AO96019 429 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 WNT4P56705 351 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 CLRN1P58418 232 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 LRFN4Q6PJG9 635 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 SLC16A12Q6ZSM3 486 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ASB18Q6ZVZ8 466 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 FCRLAQ7L513 359 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.86■□□□□ 0.45
CLN3-250ENST00000636839 MEIOBQ8N635 442 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 RPL3LQ92901 407 aaKnown RBP17.86■□□□□ 0.45
CLN3-250ENST00000636839 CPNE4Q96A23 557 aaPredicted RBP17.86■□□□□ 0.45
CLN3-250ENST00000636839 JAM3Q9BX67 310 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 NDUFA13Q9P0J0 144 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 DSPP15924 2871 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms