RNA–Protein interactions for RNA: ENST00000621474.4

CBWD3-217, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-217ENST00000621474 GIPC3Q8TF64 312 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 LRTOMTQ8WZ04 291 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 MCHR2Q969V1 340 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 RASD2Q96D21 266 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 HS3ST6Q96QI5 342 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 USB1Q9BQ65 265 aaKnown RBP12.53□□□□□ -0.4
CBWD3-217ENST00000621474 SLC17A5Q9NRA2 495 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 RASSF1Q9NS23 344 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 PDP1Q9P0J1 537 aaPredicted RBP12.53□□□□□ -0.4
CBWD3-217ENST00000621474 POLQO75417 2590 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 PLCE1Q9P212 2302 aa12.53□□□□□ -0.4
CBWD3-217ENST00000621474 LRBAP50851 2863 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 TEX13CA0A0J9YWL9 993 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 H7C1C5 153 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 DEAF1O75398 565 aaPredicted RBP12.52□□□□□ -0.4
CBWD3-217ENST00000621474 SLC2A10O95528 541 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 QDPRP09417 244 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 SDHAP31040 664 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 SH3BGRP55822 239 aaPredicted RBP12.52□□□□□ -0.4
CBWD3-217ENST00000621474 CLRN1P58418 232 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 LCN6P62502 163 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 PPA1Q15181 289 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 ANKRD16Q6P6B7 361 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 SHQ1Q6PI26 577 aaKnown RBP12.52□□□□□ -0.4
CBWD3-217ENST00000621474 KLHL17Q6TDP4 642 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 CD300LDQ6UXZ3 194 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 RASSF6Q6ZTQ3 369 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 HDDC2Q7Z4H3 204 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 WFDC8Q8IUA0 241 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 HTRA1Q92743 480 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 SAMD8Q96LT4 415 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 ZNF224Q9NZL3 707 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 REV1Q9UBZ9 1251 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 MGAT4BQ9UQ53 548 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 IER3IP1Q9Y5U9 82 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 CDH10Q9Y6N8 788 aa12.52□□□□□ -0.4
CBWD3-217ENST00000621474 NOTCH2Q04721 2471 aa12.52□□□□□ -0.41
CBWD3-217ENST00000621474 RTTNQ86VV8 2226 aa12.52□□□□□ -0.41
CBWD3-217ENST00000621474 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 BHLHE40O14503 412 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ARPC3O15145 178 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 DHHO43323 396 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ENTPD5O75356 428 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 E2F6O75461 281 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 SOX14O95416 240 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 PPP1R3DO95685 299 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 TXNDC12O95881 172 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 APEHP13798 732 aaKnown RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 B4GALT1P15291 398 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 SSTR2P30874 369 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 C10orf128Q5T292 105 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 FAM205BPQ63HN1 556 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 PTCHD4Q6ZW05 846 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 AMIGO2Q86SJ2 522 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 MAGEE2Q8TD90 523 aaPredicted RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ZNF570Q96NI8 536 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 RAB3IPQ96QF0 476 aaPredicted RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 FOXB1Q99853 325 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 B3GAT2Q9NPZ5 323 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 STX18Q9P2W9 335 aaKnown RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 GRHPRQ9UBQ7 328 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 UGT2A1Q9Y4X1 527 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 VPS13CQ709C8 3753 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ANKRD65E5RJM6 399 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ARHGEF9O43307 516 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 FASP25445 335 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 SLC6A6P31641 620 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 CD47Q08722 323 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 DBPQ10586 325 aaPredicted RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 KRR1Q13601 381 aaKnown RBP12.51□□□□□ -0.41
CBWD3-217ENST00000621474 CLEC12AQ5QGZ9 265 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 GPR139Q6DWJ6 353 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ALKBH2Q6NS38 261 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 SLC25A47Q6Q0C1 308 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 KLHL24Q6TFL4 600 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 ALG12Q9BV10 488 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 SMURF2Q9HAU4 748 aa12.51□□□□□ -0.41
CBWD3-217ENST00000621474 PDZD2O15018 2839 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 ARPC4-TTLL3A0A0A6YYG9 625 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 SLC22A23A1A5C7 686 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 PRSS37A4D1T9 235 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 A6NIZ1 184 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 SOCS2O14508 198 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 CASKO14936 926 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 GOSR1O95249 250 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 HIST1H1CP16403 213 aaKnown RBP12.5□□□□□ -0.41
CBWD3-217ENST00000621474 GSTM3P21266 225 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 CDKN2AP42771 156 aaKnown RBP12.5□□□□□ -0.41
CBWD3-217ENST00000621474 RPS6KA3P51812 740 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 RAP1BP61224 184 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 RAP1AP62834 184 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 TUBA1BP68363 451 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 TUBA4AP68366 448 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 ZNF362Q5T0B9 420 aaPredicted RBP12.5□□□□□ -0.41
CBWD3-217ENST00000621474 FAHD1Q6P587 224 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 TUBA1AQ71U36 451 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 OR5K1Q8NHB7 308 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 MUCL1Q96DR8 90 aa12.5□□□□□ -0.41
CBWD3-217ENST00000621474 PIK3IP1Q96FE7 263 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms