RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RFC3P40938 356 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 PLP2Q04941 152 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 PUDPQ08623 228 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 CD300CQ08708 224 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 FCN2Q15485 313 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC35D3Q5M8T2 416 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 AGBL5Q8NDL9 886 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 ASB12Q8WXK4 309 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 TOMM40LQ969M1 308 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 ELMOD3Q96FG2 381 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 SEC22CQ9BRL7 303 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 OR2S2Q9NQN1 319 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 PLEKHJ1Q9NW61 149 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 SLCO1C1Q9NYB5 712 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 OR52A1Q9UKL2 312 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 EXO1Q9UQ84 846 aaKnown RBP8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 DTX4Q9Y2E6 619 aa8.14□□□□□ -1.11
PDLIM5-222ENST00000615540 TEX46H3BTG2 121 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GLP1RP43220 463 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 MALLQ13021 153 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 FAM69AQ5T7M9 428 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ESX1Q8N693 406 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 STEAP2Q8NFT2 490 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ADAMTS14Q8WXS8 1223 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GPA33Q99795 319 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 METTL17Q9H7H0 456 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CALHM2Q9HA72 323 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 LHX9Q9NQ69 397 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 FLVCR2Q9UPI3 526 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 A0A0A6YYJ9 748 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TNFRSF10AO00220 468 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GLB1P16278 677 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CDK2P24941 298 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 RBMXP38159 391 aaKnown RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ACTBP60709 375 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ACTG1P63261 375 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 HLA-BQ31612 363 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GLYATL3Q5SZD4 288 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CCDC71Q8IV32 467 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 NAT6Q93015 286 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 HYLS1Q96M11 299 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CDC6Q99741 560 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 POTEKPQ9BYX7 375 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ULBP2Q9BZM5 246 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC22A13Q9Y226 551 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 MYLKQ15746 1914 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TNFSF12O43508 249 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 RFPL3O75679 317 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 RAD51DO75771 328 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CNOT4O95628 575 aaKnown RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 NME1P15531 152 aaKnown RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 PPICP45877 212 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 RNF4P78317 190 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 HSF1Q00613 529 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SF3B4Q15427 424 aaKnown RBP eCLIP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 THSD4Q6ZMP0 1018 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GRINAQ7Z429 371 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 PIGCQ92535 297 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TWSG1Q9GZX9 223 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 FGF20Q9NP95 211 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 A0A1B0GTH9 108 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 FABP7O15540 132 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GCM2O75603 506 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SIX6O95475 246 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SEMG1P04279 462 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 POU2F2P09086 479 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 GNRHRP30968 328 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TOMM34Q15785 309 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC36A2Q495M3 483 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 METTL11BQ5VVY1 283 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 LIPNQ5VXI9 398 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CRIPAKQ8N1N5 446 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 MORN4Q8NDC4 146 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 OR4C3Q8NH37 302 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 FYTTD1Q96QD9 318 aaKnown RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 DCLRE1CQ96SD1 692 aaKnown RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 POFUT1Q9H488 388 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 SERPINA5P05154 406 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ABOP16442 354 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 TCN2P20062 427 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 MSX1P28360 303 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 HOXD12P35452 270 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CX3CR1P49238 355 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 CPNE2Q96FN4 548 aaPredicted RBP8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 COPZ2Q9P299 210 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 PCDHGA1Q9Y5H4 931 aa8.13□□□□□ -1.11
PDLIM5-222ENST00000615540 ZFC3H1O60293 1989 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 TBX19O60806 448 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 FOXF1Q12946 379 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 ZNF425Q6IV72 752 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 H1FNTQ75WM6 255 aaPredicted RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CLEC1AQ8NC01 280 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 PIGTQ969N2 578 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 OR10A2Q9H208 303 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 C12orf49Q9H741 205 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CHRNA9Q9UGM1 479 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 FAM166BA8MTA8 275 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 TCRBP04435 133 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 HTR5AP47898 357 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms