RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 M0R036 132 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TSPAN2O60636 221 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 CDC14BO60729 498 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 CPSF4O95639 269 aaKnown RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 ATP1B1P05026 303 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TPT1P13693 172 aaKnown RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 SNRPBP14678 240 aaKnown RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 EPORP19235 508 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TACR1P25103 407 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 CASRP41180 1078 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 SULT1A1P50225 295 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 ZNF234Q14588 700 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 FAM189A2Q15884 450 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TMEM95Q3KNT9 176 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 C11orf87Q6NUJ2 197 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 DRAM2Q6UX65 266 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 ETFBKMTQ8IXQ9 262 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 NUDT10Q8NFP7 164 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 ZCCHC10Q8TBK6 192 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 KIRREL1Q96J84 757 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 BHLHE41Q9C0J9 482 aaPredicted RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 A4GNTQ9UNA3 340 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 FLVCR1Q9Y5Y0 555 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 NDUFS8O00217 210 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 DVL1O14640 695 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TGOLN2O43493 480 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 ANXA5P08758 320 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 CD80P33681 288 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 MAPK8P45983 427 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 OR3A1P47881 315 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 CSNK1DP48730 415 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 NKX6-1P78426 367 aaPredicted RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 SRSF5Q13243 272 aaKnown RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 FAAP20Q6NZ36 180 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 PPP1R3BQ86XI6 285 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TRAPPC5Q8IUR0 188 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 SLC30A7Q8NEW0 376 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 OR4D9Q8NGE8 314 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 OR5AP2Q8NGF4 316 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 BRIX1Q8TDN6 353 aaKnown RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 CCDC107Q8WV48 283 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 SPRYD4Q8WW59 207 aaPredicted RBP9.34□□□□□ -0.91
VPS39-214ENST00000614932 FCAMRQ8WWV6 532 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 OIT3Q8WWZ8 545 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 WDR92Q96MX6 357 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 OR14A2Q96R54 314 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 RGCCQ9H4X1 137 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 H7C417 338 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 MANBAO00462 879 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 SIAH2O43255 324 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 PRAMEF4O60810 478 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 F13BP05160 661 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 ATP1B2P14415 290 aaPredicted RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 PCBP4P57723 403 aaKnown RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 AIMP2Q13155 320 aaKnown RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 COL9A2Q14055 689 aaPredicted RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 MAPK14Q16539 360 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 ZNF791Q3KP31 576 aaPredicted RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 GXYLT1Q4G148 440 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 PRAMEF9Q5VWM5 478 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 ZNF620Q6ZNG0 422 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST2H3AQ71DI3 136 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 SZRD1Q7Z422 152 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 CD163Q86VB7 1156 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 C2orf73Q8N5S3 287 aaPredicted RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 HORMAD2Q8N7B1 307 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 OR13C8Q8NGS7 320 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 ECHDC3Q96DC8 303 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 SYT4Q9H2B2 425 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 RDH14Q9HBH5 336 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 IL23AQ9NPF7 189 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 COMMD9Q9P000 198 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 LPAR3Q9UBY5 353 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 CORO2BQ9UQ03 480 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 INSL6Q9Y581 213 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 MTCH2Q9Y6C9 303 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 CEP290O15078 2479 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 TRBV4-1A0A0J9YWV2 114 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 A0A1W2PPE2 198 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 OTOL1A6NHN0 477 aaPredicted RBP9.33□□□□□ -0.92
VPS39-214ENST00000614932 TRDCB7Z8K6 153 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 FAM157AC9JC47 383 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 C9JQL5 133 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 TSPAN6O43657 245 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BKO60814 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 FBXO24O75426 580 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 IL18BPO95998 194 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BJP06899 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 ASGR2P07307 311 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 FAM157CP0CG43 387 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 GZMBP10144 247 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BOP23527 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BBP33778 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 GJA4P35212 333 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 APLNRP35414 380 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 SLC6A11P48066 632 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BDP58876 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BCP62807 126 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 MTAPQ13126 283 aa9.33□□□□□ -0.92
VPS39-214ENST00000614932 HIST2H2BEQ16778 126 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms