RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CBR1P16152 277 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 ACADSP16219 412 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 ARR3P36575 388 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 GPR4P46093 362 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 OMPP47874 163 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 CDH11P55287 796 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 SPOCK1Q08629 439 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 LAPTM4AQ15012 233 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 DNAL1Q4LDG9 190 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 FGD3Q5JSP0 725 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 C10orf128Q5T292 105 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 LRFN4Q6PJG9 635 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 ZNF813Q6ZN06 617 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 DTX2Q86UW9 622 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 DEPDC4Q8N2C3 294 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 OR4K5Q8NGD3 323 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 OR13C2Q8NGS9 318 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 FNDC8Q8TC99 324 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 TMEM171Q8WVE6 324 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 NEUROG1Q92886 237 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 NMD3Q96D46 503 aaKnown RBP14.09□□□□□ -0.15
LSM4-206ENST00000600289 KCNK17Q96T54 332 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 KATNB1Q9BVA0 655 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 GSX2Q9BZM3 304 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 NDEL1Q9GZM8 345 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 ZNF701Q9NV72 531 aaPredicted RBP14.09□□□□□ -0.15
LSM4-206ENST00000600289 B3GNT2Q9NY97 397 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 CISD1Q9NZ45 108 aaKnown RBP14.09□□□□□ -0.15
LSM4-206ENST00000600289 ROS1P08922 2347 aa14.09□□□□□ -0.15
LSM4-206ENST00000600289 TRAV27A0A087WT01 109 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 TRBV4-1A0A0J9YWV2 114 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 DHHO43323 396 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 SMPD2O60906 423 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 TRMUO75648 421 aaKnown RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 DIRAS1O95057 198 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 GADD45GO95257 159 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 CLRN1P58418 232 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 RPL27P61353 136 aaKnown RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 MS4A2Q01362 244 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 SPIBQ01892 262 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 RUNX1T1Q06455 604 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 TRAP1Q12931 704 aaKnown RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 SEC23BQ15437 767 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 PGGHGQ32M88 737 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 ZBED5Q49AG3 693 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 SLC22A25Q6T423 547 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 CYP2R1Q6VVX0 501 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 ZDHHC21Q8IVQ6 265 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 PIAS4Q8N2W9 510 aaPredicted RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 OR51A7Q8NH64 312 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 ZNF519Q8TB69 540 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 SMAP2Q8WU79 429 aaPredicted RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 FAM46AQ96IP4 442 aaKnown RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 TNFRSF13CQ96RJ3 184 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 GPX7Q96SL4 187 aaPredicted RBP14.08□□□□□ -0.16
LSM4-206ENST00000600289 ALG12Q9BV10 488 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 C1QTNF6Q9BXI9 259 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 CXorf56Q9H5V9 222 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 FAIMQ9NVQ4 179 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 TMEM38BQ9NVV0 291 aa14.08□□□□□ -0.16
LSM4-206ENST00000600289 ZNF503-AS2A6NEH8 195 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 A6NIZ1 184 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 E7EQL1 145 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 OVOL3O00110 214 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 ACOT8O14734 319 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 PTP4A3O75365 173 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 KRT36O76013 467 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 SEC14L2O76054 403 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 PDE5AO76074 875 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 UBL3O95164 117 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 HEXAP06865 529 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 QDPRP09417 244 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 B4GALT1P15291 398 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 HMGA2P52926 109 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 CTXN1P60606 82 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 RAP1BP61224 184 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 RAP1AP62834 184 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 SHEQ5VZ18 495 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 ZNF544Q6NX49 715 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 PGM2L1Q6PCE3 622 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 B3GLCTQ6Y288 498 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 DPPA2Q7Z7J5 298 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 MEX3DQ86XN8 651 aaKnown RBP14.07□□□□□ -0.16
LSM4-206ENST00000600289 KRTAP1-3Q8IUG1 177 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 IL17RDQ8NFM7 739 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 HDAC2Q92769 488 aaKnown RBP14.07□□□□□ -0.16
LSM4-206ENST00000600289 MCHR2Q969V1 340 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 SLC7A6OSQ96CW6 309 aaPredicted RBP14.07□□□□□ -0.16
LSM4-206ENST00000600289 TSPAN32Q96QS1 320 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 DHRS9Q9BPW9 319 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 TRAF4Q9BUZ4 470 aaPredicted RBP14.07□□□□□ -0.16
LSM4-206ENST00000600289 ZNF224Q9NZL3 707 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 FBXL3Q9UKT7 428 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 SIGLEC7Q9Y286 467 aa14.07□□□□□ -0.16
LSM4-206ENST00000600289 AHCYL1O43865 530 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 NDUFB2O95178 105 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 CRYAAP02489 173 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 SOD3P08294 240 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 CD14P08571 375 aa14.06□□□□□ -0.16
LSM4-206ENST00000600289 CECR9P0C854 216 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms