RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MYBPC1Q00872 1141 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 TOP3AQ13472 1001 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 MESTQ5EB52 335 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 C10orf128Q5T292 105 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 ADAM5Q6NVV9 412 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 SLC25A47Q6Q0C1 308 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 RRM2BQ7LG56 351 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 SYT14Q8NB59 555 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 FGFBP3Q8TAT2 258 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 Q96M85 177 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 FOXB1Q99853 325 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 C1QTNF6Q9BXI9 259 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 SEC61A2Q9H9S3 476 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 CCM2LQ9NUG4 571 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 IL20RAQ9UHF4 553 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 ST6GALNAC2Q9UJ37 374 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 IGHV1-18A0A0C4DH31 117 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 IMPA2O14732 288 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 DHHO43323 396 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 OR10H3O60404 316 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 NDUFB2O95178 105 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 GASTP01350 101 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 IGKV3-15P01624 115 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 TP53P04637 393 aaPredicted RBP17■□□□□ 0.31
SHKBP1-221ENST00000599833 CD40P25942 277 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 ZNF83P51522 516 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 FMODQ06828 376 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 TSPAN31Q12999 210 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 CCNIQ14094 377 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 KLHL24Q6TFL4 600 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 SPATA24Q86W54 205 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 ARIH2OSQ8N7S6 290 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 KBTBD8Q8NFY9 601 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 HTRA1Q92743 480 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 ESRP2Q9H6T0 727 aaKnown RBP17■□□□□ 0.31
SHKBP1-221ENST00000599833 NTN4Q9HB63 628 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 TMEM38BQ9NVV0 291 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 ZKSCAN7Q9P0L1 754 aaPredicted RBP17■□□□□ 0.31
SHKBP1-221ENST00000599833 AURKCQ9UQB9 309 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 U3KQV3 271 aa17■□□□□ 0.31
SHKBP1-221ENST00000599833 FKBP6O75344 327 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 SLC2A10O95528 541 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 TXNDC12O95881 172 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 B4GALT1P15291 398 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 CD53P19397 219 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 ACVR1BP36896 505 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 TESK1Q15569 626 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 MICAQ29983 383 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 SMARCD3Q6STE5 483 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 ZNF620Q6ZNG0 422 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 FAM169BQ8N8A8 192 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 GNPDA2Q8TDQ7 276 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 NABP1Q96AH0 204 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 DUS3LQ96G46 650 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 ALG12Q9BV10 488 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 NGBQ9NPG2 151 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 B3GAT2Q9NPZ5 323 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 TMCC3Q9ULS5 477 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 RNF115Q9Y4L5 304 aa16.99■□□□□ 0.31
SHKBP1-221ENST00000599833 RTTNQ86VV8 2226 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 ABCD4O14678 606 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 CST1P01037 141 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 CD3EP07766 207 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 CELA3BP08861 270 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 PTAFRP25105 342 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 CLRN1P58418 232 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 RFX4Q33E94 735 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 C3orf36Q3SXR2 165 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 FBXW10Q5XX13 1052 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 FAM205BPQ63HN1 556 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 B3GLCTQ6Y288 498 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 ZNF813Q6ZN06 617 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 FOXL2NBQ6ZUU3 175 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 HDDC2Q7Z4H3 204 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 SKA3Q8IX90 412 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 OR8D4Q8NGM9 314 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 FANK1Q8TC84 345 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 NINJ1Q92982 152 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 RASD2Q96D21 266 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 OR52D1Q9H346 318 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 SMURF2Q9HAU4 748 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 KRCC1Q9NPI7 259 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 STX18Q9P2W9 335 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 PLEKHA6Q9Y2H5 1048 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 SAMHD1Q9Y3Z3 626 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 HIVEP1P15822 2718 aa16.98■□□□□ 0.31
SHKBP1-221ENST00000599833 ITPR3Q14573 2671 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 TEX13CA0A0J9YWL9 993 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 SLC22A23A1A5C7 686 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 H7C1C5 153 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 M0R1B8 84 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 HS3ST1O14792 307 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 CCNB2O95067 398 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 HLA-HP01893 362 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 SDHAP31040 664 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 LCN6P62502 163 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 ZNF672Q499Z4 452 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 TMEM108Q6UXF1 575 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 DPY19L2P2Q6ZN68 376 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 PTCHD4Q6ZW05 846 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms