RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PLA2G12AQ9BZM1 189 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 OR52D1Q9H346 318 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 EGLN3Q9H6Z9 239 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 REEP1Q9H902 201 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 SEC61A2Q9H9S3 476 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 UGT2A1Q9Y4X1 527 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 IER3IP1Q9Y5U9 82 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 HRNRQ86YZ3 2850 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 PDZD2O15018 2839 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 ARPC4-TTLL3A0A0A6YYG9 625 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 PPP1R3DO95685 299 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 SCG5P05408 212 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 PATE4P0C8F1 98 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 B4GALT1P15291 398 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 PRKACGP22612 351 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 CDKN2AP42771 156 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 CLRN1P58418 232 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 SPOCK1Q08629 439 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 ETFDHQ16134 617 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 SMARCD3Q6STE5 483 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF620Q6ZNG0 422 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 PTCHD4Q6ZW05 846 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 MYPOPQ86VE0 399 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 SKA3Q8IX90 412 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 AQP11Q8NBQ7 271 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 GTPBP3Q969Y2 492 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 FOXB1Q99853 325 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 B3GAT2Q9NPZ5 323 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 B3GNT2Q9NY97 397 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 POFUT2Q9Y2G5 429 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 CACNA1DQ01668 2161 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 CSMD1Q96PZ7 3565 aa12.4□□□□□ -0.42
SHKBP1-217ENST00000598558 TEX13CA0A0J9YWL9 993 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC22A23A1A5C7 686 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 ARHGEF9O43307 516 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 GOSR1O95249 250 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 TXNDC12O95881 172 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 HLA-HP01893 362 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 CELA3BP08861 270 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 CDAP32320 146 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 SH3BGRP55822 239 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 KPNB1Q14974 876 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 TAF11Q15544 211 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 C10orf128Q5T292 105 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 FBXW10Q5XX13 1052 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 KLHL17Q6TDP4 642 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF813Q6ZN06 617 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 DPY19L2P2Q6ZN68 376 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 OR10G2Q8NGC3 310 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 FANK1Q8TC84 345 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 GIPC3Q8TF64 312 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF75AQ96N20 296 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 FEVQ99581 238 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 SH3GL3Q99963 347 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 DGCR6LQ9BY27 220 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 TMEM38BQ9NVV0 291 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 DNAJB9Q9UBS3 223 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 REV1Q9UBZ9 1251 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 AMDHD2Q9Y303 409 aa12.39□□□□□ -0.43
SHKBP1-217ENST00000598558 NOTCH2Q04721 2471 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 IGHV1-18A0A0C4DH31 117 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 CENPBD1B2RD01 187 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 SHISA9B4DS77 424 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 M0R1B8 84 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 SOCS2O14508 198 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 HOXB1P14653 301 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 CD40P25942 277 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 IFNGR2P38484 337 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 PIGFQ07326 219 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF362Q5T0B9 420 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 OTPQ5XKR4 325 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF704Q6ZNC4 412 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 RASSF6Q6ZTQ3 369 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 AMIGO2Q86SJ2 522 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 MDP1Q86V88 176 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC22A24Q8N4F4 322 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 LINC00471Q8N535 108 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 KBTBD8Q8NFY9 601 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 NSMAFQ92636 917 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 NABP1Q96AH0 204 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF570Q96NI8 536 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ERMAPQ96PL5 475 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ALG12Q9BV10 488 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 KRCC1Q9NPI7 259 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 ARMC1Q9NVT9 282 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 IL20Q9NYY1 176 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 PDP1Q9P0J1 537 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 CRNNQ9UBG3 495 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 GRHPRQ9UBQ7 328 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 AP4S1Q9Y587 144 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 CSMD2Q7Z408 3487 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 TACC2O95359 2948 aa12.38□□□□□ -0.43
SHKBP1-217ENST00000598558 POLQO75417 2590 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 PRSS37A4D1T9 235 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 A6NIZ1 184 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 DCTN6O00399 190 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 BHLHE40O14503 412 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 GNGT2O14610 69 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 SOX14O95416 240 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 IGLV1-44P01699 117 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms