RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 AURKCQ9UQB9 309 aa12.07□□□□□ -0.48
UPF1-205ENST00000598209 LAMP3Q9UQV4 416 aa12.07□□□□□ -0.48
UPF1-205ENST00000598209 USF3Q68DE3 2245 aa12.07□□□□□ -0.48
UPF1-205ENST00000598209 MED13LQ71F56 2210 aa12.07□□□□□ -0.48
UPF1-205ENST00000598209 E7EQL1 145 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 ATP6V1G2-DDX39BF2Z307 99 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 IGKV3-15P01624 115 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 IGLV1-44P01699 117 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 HLA-HP01893 362 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 SOD3P08294 240 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 CELA3BP08861 270 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 CECR9P0C854 216 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 DANCRP0C864 163 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 CD79AP11912 226 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 ZNF26P17031 533 aaPredicted RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 ARR3P36575 388 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 RPL4P36578 427 aaKnown RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 ACVR1BP36896 505 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 IDH3GP51553 393 aaPredicted RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 ERVK-25P63136 954 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 CHRNB3Q05901 458 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 CD47Q08722 323 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 TRAP1Q12931 704 aaKnown RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 NPRL3Q12980 569 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 PGGHGQ32M88 737 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 FAM205BPQ63HN1 556 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 B3GLCTQ6Y288 498 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 MDP1Q86V88 176 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 NANOS1Q8WY41 292 aaKnown RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 RSRC1Q96IZ7 334 aaKnown RBP12.06□□□□□ -0.48
UPF1-205ENST00000598209 TSPAN32Q96QS1 320 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 KCNK17Q96T54 332 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 KCNS3Q9BQ31 491 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 BTBD10Q9BSF8 475 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 ALG12Q9BV10 488 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 KATNB1Q9BVA0 655 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 NDEL1Q9GZM8 345 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 SEC61A2Q9H9S3 476 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 TMEM38BQ9NVV0 291 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 B3GNT2Q9NY97 397 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 TMCC3Q9ULS5 477 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 MOKQ9UQ07 419 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 SIGLEC7Q9Y286 467 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 ATP23Q9Y6H3 246 aa12.06□□□□□ -0.48
UPF1-205ENST00000598209 UNC119BA6NIH7 251 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 A6NIZ1 184 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ACOT8O14734 319 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 OR10H3O60404 316 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 TMCC2O75069 709 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 PTP4A3O75365 173 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 NDUFB2O95178 105 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 CRYAAP02489 173 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 CD14P08571 375 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 OR8G3PP0DMU2 310 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 MAGEA2P43356 314 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ZNF84P51523 738 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ZNF133P52736 654 aaPredicted RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 RAP1BP61224 184 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 RAP1AP62834 184 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 NKX6-1P78426 367 aaPredicted RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 NAAAQ02083 359 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 FMODQ06828 376 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 PIGFQ07326 219 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 BNIP1Q12981 228 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 GSG1Q2KHT4 349 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 FAM98BQ52LJ0 330 aaKnown RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 C10orf128Q5T292 105 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ZER1Q7Z7L7 766 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 MYPOPQ86VE0 399 aaPredicted RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 SKA3Q8IX90 412 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 LRRC75A-AS1Q8N1F1 130 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 SLC22A24Q8N4F4 322 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ZNF519Q8TB69 540 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 HTRA1Q92743 480 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 POP5Q969H6 163 aaKnown RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 NMD3Q96D46 503 aaKnown RBP12.05□□□□□ -0.48
UPF1-205ENST00000598209 PERPQ96FX8 193 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 GPA33Q99795 319 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 DHRS9Q9BPW9 319 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 TRIM15Q9C019 465 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 CXorf56Q9H5V9 222 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 NOX3Q9HBY0 568 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 FAIMQ9NVQ4 179 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ZNF224Q9NZL3 707 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 ADAM18Q9Y3Q7 739 aa12.05□□□□□ -0.48
UPF1-205ENST00000598209 F8P00451 2351 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 IGKV1D-43A0A0B4J1Z2 117 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 ENTPD5O75356 428 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 DNAJC8O75937 253 aaPredicted RBP12.04□□□□□ -0.48
UPF1-205ENST00000598209 KRT36O76013 467 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 UBL3O95164 117 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 FARS2O95363 451 aaKnown RBP12.04□□□□□ -0.48
UPF1-205ENST00000598209 SLC2A10O95528 541 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 NR2C1P13056 603 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 IFNGR2P38484 337 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 PGM2L1Q6PCE3 622 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 SLC25A47Q6Q0C1 308 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 FAM122BQ7Z309 247 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 DTX2Q86UW9 622 aa12.04□□□□□ -0.48
UPF1-205ENST00000598209 CLDN22Q8N7P3 220 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms