RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 VRK1Q99986 396 aaPredicted RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 MRPL37Q9BZE1 423 aaKnown RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 MED31Q9Y3C7 131 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 IGKV1D-43A0A0B4J1Z2 117 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 CXCR6O00574 342 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 FFAR1O14842 300 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 TRMUO75648 421 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 SLC2A10O95528 541 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 RAB36O95755 333 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 BCL10O95999 233 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 IGHG1P01857 330 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 HIST1H2ABP04908 130 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 QDPRP09417 244 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 IGHV4-31P0DP07 118 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 NR4A1P22736 598 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 YAP1P46937 504 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 GSK3BP49841 420 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 PDLIM4P50479 330 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 NUDT2P50583 147 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 ZNF133P52736 654 aaPredicted RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 CLRN1P58418 232 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 FMODQ06828 376 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 FHL1Q13642 323 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 FXNQ16595 210 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 ARMC4Q5T2S8 1044 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 HIST3H2AQ7L7L0 130 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 PIWIL3Q7Z3Z3 882 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 MEX3DQ86XN8 651 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 PAQR4Q8N4S7 273 aaPredicted RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 RBM15BQ8NDT2 890 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 IL17RDQ8NFM7 739 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 HDAC2Q92769 488 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 HIST1H2ACQ93077 130 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 MCHR2Q969V1 340 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 MRPL24Q96A35 216 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 NMD3Q96D46 503 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 SH3GL3Q99963 347 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 MYLK2Q9H1R3 596 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 YAE1D1Q9NRH1 226 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 INIPQ9NRY2 104 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 MYEF2Q9P2K5 600 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 RHCGQ9UBD6 479 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 ABCD2Q9UBJ2 740 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 HIF3AQ9Y2N7 669 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 MALRD1Q5VYJ5 2156 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 SONP18583 2426 aaKnown RBP11.25□□□□□ -0.61
LIG1-212ENST00000596549 TANC2Q9HCD6 1990 aa11.25□□□□□ -0.61
LIG1-212ENST00000596549 IGHV4-61A0A0C4DH41 118 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 NPIPB13A6NJU9 1138 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 NPIPB4C9JG80 1138 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 MCIDASD6RGH6 385 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 NDUFS8O00217 210 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 CCDC22O60826 627 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 OR8G3PP0DMU2 310 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 IFI30P13284 250 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 ACADSP16219 412 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 MAKP20794 623 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 NR4A2P43354 598 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 DAP3P51398 398 aaKnown RBP11.24□□□□□ -0.61
LIG1-212ENST00000596549 SEC24CP53992 1094 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 ST3GAL3Q11203 375 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 GGTLC2Q14390 218 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 C10orf128Q5T292 105 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 HACD2Q6Y1H2 254 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 CBLL1Q75N03 491 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 TSEN54Q7Z6J9 526 aaKnown RBP11.24□□□□□ -0.61
LIG1-212ENST00000596549 IGFN1Q86VF2 1251 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 LRRC75AQ8NAA5 344 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 SYT14Q8NB59 555 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 OR4K5Q8NGD3 323 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 NABP1Q96AH0 204 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 HSH2DQ96JZ2 352 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 PIMREGQ9BSJ6 248 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 BPESC1Q9GZL8 116 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 TPK1Q9H3S4 243 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 DENND2DQ9H6A0 471 aaPredicted RBP11.24□□□□□ -0.61
LIG1-212ENST00000596549 UGT2A1Q9Y4X1 527 aa11.24□□□□□ -0.61
LIG1-212ENST00000596549 FBN3Q75N90 2809 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 DNHD1Q96M86 4753 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 A0A1W2PRG6 482 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 SH3PXD2BA1X283 911 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 A8MV72 311 aaPredicted RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 CENPBD1B2RD01 187 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 ZNF682O95780 498 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 SERPINA1P01009 418 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 IGHMP01871 453 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 IFNW1P05000 195 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 SERPINA5P05154 406 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 MMP7P09237 267 aaPredicted RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 CCL2P13500 99 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 NCK1P16333 377 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 USF1P22415 310 aaPredicted RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 GLRXP35754 106 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 TOP3AQ13472 1001 aaPredicted RBP11.23□□□□□ -0.61
LIG1-212ENST00000596549 LAPTM4AQ15012 233 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 NRN1LQ496H8 165 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 ALG10Q5BKT4 473 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 LRP11Q86VZ4 500 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 HIPK1Q86Z02 1210 aa11.23□□□□□ -0.61
LIG1-212ENST00000596549 NRMQ8IXM6 262 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms