RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CTLA4P16410 223 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 PCMT1P22061 227 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 C21orf33P30042 268 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 PYCR1P32322 319 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 PTGS2P35354 604 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF133P52736 654 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 GTF2IRD2BQ6EKJ0 949 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 CHMP1BQ7LBR1 199 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 GTF2IRD2Q86UP8 949 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 STX19Q8N4C7 294 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 ABHD3Q8WU67 409 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 FAR1Q8WVX9 515 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 TMEM54Q969K7 222 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 TMEM80Q96HE8 168 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 CDCA4Q9BXL8 241 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 NUAK2Q9H093 628 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 MARCH7Q9H992 704 aa13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 FOXD3Q9UJU5 478 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 DIMT1Q9UNQ2 313 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF726A6NNF4 738 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 GPR171O14626 319 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 AKAP8O43823 692 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 IGHA1P01876 353 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 TFAP2AP05549 437 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 ATP6V1B1P15313 513 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 JUNBP17275 347 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 CRABP1P29762 137 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 NTF4P34130 210 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 RPS7P62081 194 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 POU4F2Q12837 409 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 KLRB1Q12918 225 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 CAMK2DQ13557 499 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 RNPS1Q15287 305 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 SLC25A47Q6Q0C1 308 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 PLXDC2Q6UX71 529 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 B3GLCTQ6Y288 498 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 CISD2Q8N5K1 135 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 SYT14Q8NB59 555 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 OR4F15Q8NGB8 312 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 OR51L1Q8NGJ5 315 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 FNDC8Q8TC99 324 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 ZMYND19Q96E35 227 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 SLX1AQ9BQ83 275 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 ZNF649Q9BS31 505 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 SLC25A18Q9H1K4 315 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 BCO1Q9HAY6 547 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 ADGRL4Q9HBW9 690 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 SRA1Q9HD15 236 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 KLHL9Q9P2J3 617 aa13.08□□□□□ -0.32
SHKBP1-211ENST00000595945 NBASA2RRP1 2371 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 IGKV1D-43A0A0B4J1Z2 117 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 SLC22A20A6NK97 555 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 AHRRA9YTQ3 701 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 ZNHIT1O43257 154 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 SLC16A7O60669 478 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 KHDRBS3O75525 346 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 APOL3O95236 402 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 RAB36O95755 333 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 FADS2O95864 444 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 TGM6O95932 706 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 CLPTM1O96005 669 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 TFP02787 698 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 SBK2P0C263 348 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 DCKP27707 260 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 ALDH3B2P48448 385 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 CENPAP49450 140 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 SELENOPP49908 381 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 CLRN1P58418 232 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 FMODQ06828 376 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 THEM4Q5T1C6 240 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 XAF1Q6GPH4 301 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 LRFN4Q6PJG9 635 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 C19orf48Q6RUI8 117 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 PCSK4Q6UW60 755 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 C20orf196Q8IYI0 205 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 TEX19Q8NA77 164 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 POMGNT2Q8NAT1 580 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 PROKR2Q8NFJ6 384 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 OR51G2Q8NGK0 314 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 INTS12Q96CB8 462 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 RBP7Q96R05 134 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 GP6Q9HCN6 339 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 GLTPQ9NZD2 209 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 EMC3Q9P0I2 261 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 SNX5Q9Y5X3 404 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 EPG5Q9HCE0 2579 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 IGSF10Q6WRI0 2623 aa13.07□□□□□ -0.32
SHKBP1-211ENST00000595945 COL6A6A6NMZ7 2263 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 CACNA1BQ00975 2339 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 PCNX1Q96RV3 2341 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 FAM171A2A8MVW0 826 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 YES1P07947 543 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 LIMS3P0CW19 117 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 LIMS4P0CW20 117 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 GAAP10253 952 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 SFTPCP11686 197 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 FCGR2AP12318 317 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 MAP2K4P45985 399 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 CSNK1A1P48729 337 aa13.06□□□□□ -0.32
SHKBP1-211ENST00000595945 BLVRAP53004 296 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms