RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TSPAN19P0C672 248 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 SAGP10523 405 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-203ENST00000593582 IFI30P13284 250 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ACADSP16219 412 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF14P17017 642 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-203ENST00000593582 NPR2P20594 1047 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 PCSK6P29122 969 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 THBS4P35443 961 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF84P51523 738 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 RUNX1T1Q06455 604 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 SNTB2Q13425 540 aaKnown RBP13.22□□□□□ -0.29
TRIM28-203ENST00000593582 LAPTM4AQ15012 233 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 HIST3H3Q16695 136 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ALG10Q5BKT4 473 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 KRT80Q6KB66 452 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 SKA3Q8IX90 412 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 NOXO1Q8NFA2 376 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 MOSPD2Q8NHP6 518 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ASB10Q8WXI3 467 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 FAM168AQ92567 244 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 MCHR2Q969V1 340 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF347Q96SE7 839 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 VRK1Q99986 396 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-203ENST00000593582 MRPL13Q9BYD1 178 aaKnown RBP13.22□□□□□ -0.29
TRIM28-203ENST00000593582 PLK3Q9H4B4 646 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 RPS6KA6Q9UK32 745 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 HIF3AQ9Y2N7 669 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 TLN2Q9Y4G6 2542 aa13.22□□□□□ -0.29
TRIM28-203ENST00000593582 HIVEP2P31629 2446 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NPIPB13A6NJU9 1138 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NPIPB4C9JG80 1138 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 hCG_2039718K7EN88 272 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 FFAR1O14842 300 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 GMNNO75496 209 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 TRMUO75648 421 aaKnown RBP13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NR2C1P13056 603 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 SLC25A16P16260 332 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NCK1P16333 377 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NR4A1P22736 598 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 GALK2Q01415 458 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NRN1LQ496H8 165 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF730Q6ZMV8 503 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 DPPA2Q7Z7J5 298 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 CYP4Z1Q86W10 505 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NRMQ8IXM6 262 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 CDK20Q8IZL9 346 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 RNF113BQ8IZP6 322 aaKnown RBP13.21□□□□□ -0.29
TRIM28-203ENST00000593582 OR4K5Q8NGD3 323 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF75AQ96N20 296 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 SORCS2Q96PQ0 1159 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 SEPHS2Q99611 448 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 SH3GL3Q99963 347 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 TXNIPQ9H3M7 391 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 MAN2C1Q9NTJ4 1040 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 ADA2Q9NZK5 511 aa13.21□□□□□ -0.29
TRIM28-203ENST00000593582 NAV3Q8IVL0 2385 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 INAFM1C9JVW0 142 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 LY6HO94772 140 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 SERPINA5P05154 406 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 ERCC1P07992 297 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-203ENST00000593582 PATE4P0C8F1 98 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 ZNF35P13682 527 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 MAKP20794 623 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 FUT4P22083 530 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 PPOXP50336 477 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 GNGT1P63211 74 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 LSM11P83369 360 aaKnown RBP eCLIP13.2□□□□□ -0.3
TRIM28-203ENST00000593582 MYBPC1Q00872 1141 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 PRKCDQ05655 676 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 TAF11Q15544 211 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 ANKDD1AQ495B1 522 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 SLC36A2Q495M3 483 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 ARMC4Q5T2S8 1044 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 GKAP1Q5VSY0 366 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-203ENST00000593582 TMEM53Q6P2H8 277 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 RRM2BQ7LG56 351 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 OAFQ86UD1 273 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 SVOPLQ8N434 492 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 C10orf105Q8TEF2 133 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 ACOT11Q8WXI4 607 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-203ENST00000593582 RAB1BQ9H0U4 201 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 RNF121Q9H920 327 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 EGFL7Q9UHF1 273 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 CMAHPQ9Y471 501 aa13.2□□□□□ -0.3
TRIM28-203ENST00000593582 FN1P02751 2386 aaKnown RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 EFCAB9A8MZ26 197 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 MGRN1O60291 552 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 PRSS23O95084 383 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 SLC9A3P48764 834 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 GYS2P54840 703 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 KRTAP1-1Q07627 177 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 CD47Q08722 323 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 TOP3AQ13472 1001 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 RAB39AQ14964 217 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 C10orf128Q5T292 105 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 GLYATQ6IB77 296 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 MBOAT2Q6ZWT7 520 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 SLC16A14Q7RTX9 510 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 ZNF584Q8IVC4 421 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 ANKS4BQ8N8V4 417 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms