RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CLDN1O95832 211 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 CLIC3O95833 236 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 IGFBP1P08833 259 aaPredicted RBP13.71□□□□□ -0.21
SS18-216ENST00000580751 IFNGR1P15260 489 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 GABRB1P18505 474 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 NTF4P34130 210 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 CD79BP40259 229 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 PEX19P40855 299 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 DAP3P51398 398 aaKnown RBP13.71□□□□□ -0.21
SS18-216ENST00000580751 SORDQ00796 357 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 CD47Q08722 323 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 CDK5R2Q13319 367 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 SNAPC1Q16533 368 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 OCLNQ16625 522 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 CLEC12AQ5QGZ9 265 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 FBXW9Q5XUX1 488 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 ACSM5Q6NUN0 579 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 NIPAL3Q6P499 406 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 UGT2A3Q6UWM9 527 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 Q6ZT83 130 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 SLC35D2Q76EJ3 337 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 ENTHD1Q8IYW4 607 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 UBE2J2Q8N2K1 259 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 POMGNT2Q8NAT1 580 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 OR4Q3Q8NH05 313 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 MOSPD2Q8NHP6 518 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 TMEM163Q8TC26 289 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 ZNF566Q969W8 418 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 PLEKHA8Q96JA3 519 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 ADAD1Q96M93 576 aaKnown RBP13.71□□□□□ -0.21
SS18-216ENST00000580751 PLCXD1Q9NUJ7 323 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 TVP23BQ9NYZ1 205 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 UBAP1Q9NZ09 502 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 MALT1Q9UDY8 824 aa13.71□□□□□ -0.21
SS18-216ENST00000580751 ZNF726A6NNF4 738 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 RIIAD1A6NNX1 92 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 MCIDASD6RGH6 385 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 SLC43A1O75387 559 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 ZNF432O94892 652 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 TNFAIP8O95379 198 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 BCL10O95999 233 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 F13BP05160 661 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 ZNF3P17036 446 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 EDNRAP25101 427 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 NOS3P29474 1203 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 SDHAP31040 664 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 SELENOPP49908 381 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 TMED1Q13445 227 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 P2RY6Q15077 328 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 KCTD21Q4G0X4 260 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 C6orf141Q5SZD1 244 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 TMEM236Q5W0B7 351 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 NHLRC1Q6VVB1 395 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.7□□□□□ -0.22
SS18-216ENST00000580751 FAM122BQ7Z309 247 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 ABHD12BQ7Z5M8 362 aaPredicted RBP13.7□□□□□ -0.22
SS18-216ENST00000580751 ADCK1Q86TW2 530 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 GABRG1Q8N1C3 465 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 RFKQ969G6 155 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 OR2M2Q96R28 347 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 TXNIPQ9H3M7 391 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 NPDC1Q9NQX5 325 aaPredicted RBP13.7□□□□□ -0.22
SS18-216ENST00000580751 CLN6Q9NWW5 311 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 MED29Q9NX70 200 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 ZNF226Q9NYT6 803 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 GRHPRQ9UBQ7 328 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 UPB1Q9UBR1 384 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 PRSS50Q9UI38 385 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 MYRFQ9Y2G1 1151 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 FREM1Q5H8C1 2179 aa13.7□□□□□ -0.22
SS18-216ENST00000580751 SLC35F4A4IF30 521 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 A6NIZ1 184 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 CENPBD1B2RD01 187 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 MRPS14O60783 128 aaKnown RBP13.69□□□□□ -0.22
SS18-216ENST00000580751 KRT33AO76009 404 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 IGHV3-9P01782 118 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 PAICSP22234 425 aaKnown RBP13.69□□□□□ -0.22
SS18-216ENST00000580751 BIDP55957 195 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 CTXN1P60606 82 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 RAP1BP61224 184 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 RAP1AP62834 184 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 ACKR1Q16570 336 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 TMEM123Q8N131 208 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 IQCF1Q8N6M8 205 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 OR6X1Q8NH79 312 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 TXNDC15Q96J42 360 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 ERMAPQ96PL5 475 aaPredicted RBP13.69□□□□□ -0.22
SS18-216ENST00000580751 KATNB1Q9BVA0 655 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 LINC00470Q9BZP3 86 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 ENKD1Q9H0I2 346 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 ASB6Q9NWX5 421 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 SCN3BQ9NY72 215 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 CENPEQ02224 2701 aa13.69□□□□□ -0.22
SS18-216ENST00000580751 HCFC1P51610 2035 aa13.68□□□□□ -0.22
SS18-216ENST00000580751 MAGEA13PA6NCF6 341 aa13.68□□□□□ -0.22
SS18-216ENST00000580751 TRIM64A6NGJ6 449 aa13.68□□□□□ -0.22
SS18-216ENST00000580751 C16orf97H3BN30 126 aa13.68□□□□□ -0.22
SS18-216ENST00000580751 TLX2O43763 284 aaPredicted RBP13.68□□□□□ -0.22
SS18-216ENST00000580751 PPP1R3DO95685 299 aa13.68□□□□□ -0.22
SS18-216ENST00000580751 PSMB1P20618 241 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms