RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRMUO75648 421 aaKnown RBP13.05□□□□□ -0.32
VPS39-210ENST00000568357 DIRAS1O95057 198 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 IGHV4-39P01824 125 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 IGHG1P01857 330 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 CRYAAP02489 173 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 SEMG1P04279 462 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 PATE4P0C8F1 98 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 T-ENOLP0DO92 83 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 ACADSP16219 412 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 RHCEP18577 417 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 APOBEC3AP31941 199 aaPredicted RBP13.05□□□□□ -0.32
VPS39-210ENST00000568357 MXRA7P84157 204 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 MYBPC1Q00872 1141 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 HGFACQ04756 655 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 MST1LQ2TV78 715 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 ALG10Q5BKT4 473 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 PODNL1Q6PEZ8 512 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 PIWIL3Q7Z3Z3 882 aaKnown RBP13.05□□□□□ -0.32
VPS39-210ENST00000568357 CYP4Z1Q86W10 505 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 FBXL14Q8N1E6 418 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 SYT14Q8NB59 555 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 FGFBP3Q8TAT2 258 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 SLC7A13Q8TCU3 470 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 HTRA1Q92743 480 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 TRMT61AQ96FX7 289 aaKnown RBP13.05□□□□□ -0.32
VPS39-210ENST00000568357 PYURFQ96I23 114 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 C18orf12Q96KH6 178 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 ZNF75AQ96N20 296 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 MAGEL2Q9UJ55 1249 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 ADAM21Q9UKJ8 722 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 FAM32AQ9Y421 112 aaKnown RBP13.05□□□□□ -0.32
VPS39-210ENST00000568357 V9GYQ6 96 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 USF3Q68DE3 2245 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 A0A1W2PRQ8 180 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 MCIDASD6RGH6 385 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 CDC42EP2O14613 210 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 ARPC2O15144 300 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 HEXAP06865 529 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 H1F0P07305 194 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 INHBBP09529 407 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 SAGP10523 405 aaPredicted RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 CD79AP11912 226 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 GPR4P46093 362 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 DAP3P51398 398 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 MNAT1P51948 309 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 CLRN1P58418 232 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 NPRL3Q12980 569 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 DGCR6Q14129 220 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 TMPRSS11FQ6ZWK6 438 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 OAFQ86UD1 273 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 IGFN1Q86VF2 1251 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 SLC22A24Q8N4F4 322 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 OR13C2Q8NGS9 318 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 HDAC2Q92769 488 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 NMD3Q96D46 503 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 MS4A3Q96HJ5 214 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 KCNS3Q9BQ31 491 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 CACNG6Q9BXT2 260 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 TXNIPQ9H3M7 391 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 ANKRD19PQ9H560 264 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 MOV10Q9HCE1 1003 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 TMEM38BQ9NVV0 291 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 NDE1Q9NXR1 346 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 ZNF346Q9UL40 294 aaKnown RBP13.04□□□□□ -0.32
VPS39-210ENST00000568357 ARID1AO14497 2285 aa13.04□□□□□ -0.32
VPS39-210ENST00000568357 TRBV4-1A0A0J9YWV2 114 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 NPIPB13A6NJU9 1138 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 CENPBD1B2RD01 187 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 NPIPB4C9JG80 1138 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 H7C1Q1 480 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 ZNF26P17031 533 aaPredicted RBP13.03□□□□□ -0.32
VPS39-210ENST00000568357 GIPRP48546 466 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 CTXN1P60606 82 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 RAB1AP62820 205 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 TOP3AQ13472 1001 aaPredicted RBP13.03□□□□□ -0.32
VPS39-210ENST00000568357 SEC23BQ15437 767 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 GSG1Q2KHT4 349 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 SPATS1Q496A3 300 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 RINLQ6ZS11 566 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 CDK20Q8IZL9 346 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 CLDN22Q8N7P3 220 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 NOXO1Q8NFA2 376 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 NSMCE2Q96MF7 247 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 SH3GL3Q99963 347 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 FUZQ9BT04 418 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 CA10Q9NS85 328 aa13.03□□□□□ -0.32
VPS39-210ENST00000568357 FBN1P35555 2871 aaKnown RBP13.03□□□□□ -0.32
VPS39-210ENST00000568357 IGKV1D-43A0A0B4J1Z2 117 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 IGHV2OR16-5A0A0B4J2B6 119 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 PTP4A3O75365 173 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 IGHMP01871 453 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 OR8G3PP0DMU2 310 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 ZNF14P17017 642 aaPredicted RBP13.02□□□□□ -0.33
VPS39-210ENST00000568357 ACVR1BP36896 505 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 SERPINF1P36955 418 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 PTDSS1P48651 473 aaKnown RBP13.02□□□□□ -0.33
VPS39-210ENST00000568357 SLC9A3P48764 834 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 ZNF133P52736 654 aaPredicted RBP13.02□□□□□ -0.33
VPS39-210ENST00000568357 RPL27P61353 136 aaKnown RBP13.02□□□□□ -0.33
VPS39-210ENST00000568357 TAF11Q15544 211 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms