RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DPPA2Q7Z7J5 298 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 SVOPLQ8N434 492 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 ANKS4BQ8N8V4 417 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 MS4A3Q96HJ5 214 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 PIMREGQ9BSJ6 248 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 FNDC11Q9BVV2 318 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 RNF121Q9H920 327 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 DYNLRB1Q9NP97 96 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 C20orf141Q9NUB4 165 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 TMEM38BQ9NVV0 291 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 A0A096LNT2 108 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 LOC390937A0A1W2PQ73 354 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 A8MV72 311 aaPredicted RBP14.56□□□□□ -0.08
CLK3-210ENST00000563112 CXCR6O00574 342 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 ZNF682O95780 498 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 IFNW1P05000 195 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 SLC7A2P52569 658 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 RPS23P62266 143 aaKnown RBP14.56□□□□□ -0.08
CLK3-210ENST00000563112 RAB39AQ14964 217 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 TMEM53Q6P2H8 277 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 ZNF540Q8NDQ6 660 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 NEU4Q8WWR8 484 aaPredicted RBP14.56□□□□□ -0.08
CLK3-210ENST00000563112 ASB10Q8WXI3 467 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 MCHR2Q969V1 340 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 CMTM5Q96DZ9 223 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 ZNF75AQ96N20 296 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 DOK1Q99704 481 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 ZNF224Q9NZL3 707 aa14.56□□□□□ -0.08
CLK3-210ENST00000563112 CHD3Q12873 2000 aaKnown RBP14.55□□□□□ -0.08
CLK3-210ENST00000563112 SH3PXD2BA1X283 911 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 MGRN1O60291 552 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 SERPINA5P05154 406 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 NR2C1P13056 603 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 IFI30P13284 250 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 ZNF35P13682 527 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 ACADSP16219 412 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 GLRXP35754 106 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 LSM11P83369 360 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLK3-210ENST00000563112 VLDLRP98155 873 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 MYBPC1Q00872 1141 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 TRAM2Q15035 370 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 SLC36A2Q495M3 483 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 NRN1LQ496H8 165 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 IFI44LQ53G44 452 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 HACD2Q6Y1H2 254 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 FKBP9P1Q75LS8 142 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 SLC16A14Q7RTX9 510 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 SYT14Q8NB59 555 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 NOXO1Q8NFA2 376 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 MOSPD2Q8NHP6 518 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 GEMIN6Q8WXD5 167 aaKnown RBP14.55□□□□□ -0.08
CLK3-210ENST00000563112 BPIFA2Q96DR5 249 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 ZNF347Q96SE7 839 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 SH3GL3Q99963 347 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 ELAC2Q9BQ52 826 aaKnown RBP14.55□□□□□ -0.08
CLK3-210ENST00000563112 KCNN2Q9H2S1 579 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 C1orf198Q9H425 327 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 A4GNTQ9UNA3 340 aa14.55□□□□□ -0.08
CLK3-210ENST00000563112 TMEM129A0AVI4 362 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 NPIPB13A6NJU9 1138 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 NPIPB4C9JG80 1138 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 NME4O00746 187 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 TRMUO75648 421 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 PTHP01270 115 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 PATE4P0C8F1 98 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 YAP1P46937 504 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 EVX1P49640 407 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 NUDT2P50583 147 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 PLP2Q04941 152 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 GGTLC2Q14390 218 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 LAPTM4AQ15012 233 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 TAF11Q15544 211 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 HIST3H3Q16695 136 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 ALG10Q5BKT4 473 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 CYB5R2Q6BCY4 276 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 CBLL1Q75N03 491 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 VTCN1Q7Z7D3 282 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 PRIMA1Q86XR5 153 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 TREML1Q86YW5 311 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 CDK20Q8IZL9 346 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 OFCC1Q8IZS5 231 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 OR4K5Q8NGD3 323 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 FAM162AQ96A26 154 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 MRPL24Q96A35 216 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 KCTD14Q9BQ13 255 aaPredicted RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 MRPL13Q9BYD1 178 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 NSRP1Q9H0G5 558 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 TXNIPQ9H3M7 391 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 GMPR2Q9P2T1 348 aaKnown RBP14.54□□□□□ -0.08
CLK3-210ENST00000563112 SLC7A8Q9UHI5 535 aa14.54□□□□□ -0.08
CLK3-210ENST00000563112 ATRQ13535 2644 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 RTTNQ86VV8 2226 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 SLC22A23A1A5C7 686 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 GMNCA6NCL1 334 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 VWC2LB2RUY7 222 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 PIP5K1CO60331 668 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 TSPAN19P0C672 248 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 SAGP10523 405 aaPredicted RBP14.53□□□□□ -0.08
CLK3-210ENST00000563112 NR4A2P43354 598 aa14.53□□□□□ -0.08
CLK3-210ENST00000563112 GSK3BP49841 420 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms