RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-229	ENST00000557348	TOMM34	Q15785	309 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ZMAT1	Q5H9K5	638 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	TRIL	Q7L0X0	811 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	SHF	Q7M4L6	423 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	CYB561A3	Q8NBI2	242 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	MFSD8	Q8NHS3	518 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ZNF431	Q8TF32	576 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	SLC25A43	Q8WUT9	341 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	TM9SF4	Q92544	642 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	DDO	Q99489	341 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	PRRX2	Q99811	253 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	HCAR1	Q9BXC0	346 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	POTEKP	Q9BYX7	375 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	MED28	Q9H204	178 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	C12orf4	Q9NQ89	552 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ADAM18	Q9Y3Q7	739 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	TEX13C	A0A0J9YWL9	993 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	TMEM72	A0PK05	275 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	LRRN3	E7EW58	273 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ADAM10	O14672	748 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	DKK1	O94907	266 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	RRAS	P10301	218 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	F8A1	P23610	371 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	STOM	P27105	288 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	SSR4	P51571	173 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	RPS15	P62841	145 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	CTAG1A	P78358	180 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	INSM1	Q01101	510 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ZNF791	Q3KP31	576 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	LEG1	Q6P5S2	330 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	GPAT4	Q86UL3	456 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	TMEM99	Q8N816	258 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	OR11G2	Q8NGC1	345 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	MOSPD2	Q8NHP6	518 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	C1GALT1C1	Q96EU7	318 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	NMNAT3	Q96T66	252 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	HDHD5	Q9BXW7	423 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	KLHL1	Q9NR64	748 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	UBQLN2	Q9UHD9	624 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	SF3B6	Q9Y3B4	125 aa	Known RBP	11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	NUBP2	Q9Y5Y2	271 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348		R4GN57	208 aa		11.43	□□□□□ -0.58
SHMT2-229	ENST00000557348	ASCC3	Q8N3C0	2202 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	HSPB2	A8KAH6	182 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	C21orf140	B9A014	251 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	PHYH	O14832	338 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	FZD7	O75084	574 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	TMEM127	O75204	238 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	DXO	O77932	396 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	TGM6	O95932	706 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	HP	P00738	406 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	SERPINA3	P01011	423 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	CD1A	P06126	327 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	CEL	P19835	753 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	AZGP1	P25311	298 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	FOXL2	P58012	376 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	ZP4	Q12836	540 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	HSPB2	Q16082	182 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	CRTC2	Q53ET0	693 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	FCRLB	Q6BAA4	426 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	PAMR1	Q6UXH9	720 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	FGD2	Q7Z6J4	655 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	KLB	Q86Z14	1044 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	SLC35F2	Q8IXU6	374 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	MS4A15	Q8N5U1	240 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	SCMH1	Q96GD3	660 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	SGCZ	Q96LD1	299 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348		Q96M85	177 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	PTDSS2	Q9BVG9	487 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	GPR87	Q9BY21	358 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	MCUB	Q9NWR8	336 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	PISD	Q9UG56	409 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	TCFL5	Q9UL49	500 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	TMEM14A	Q9Y6G1	99 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348	SESN1	Q9Y6P5	492 aa		11.42	□□□□□ -0.58
SHMT2-229	ENST00000557348		A0A1W2PRG6	482 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348		A6NIZ1	184 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	KRBOX1	C9JBD0	128 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	RNF13	O43567	381 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	PLPP2	O43688	288 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	RGS9	O75916	674 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	MT-CO3	P00414	261 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	GBX2	P52951	348 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	RAP1B	P61224	184 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	RPL27	P61353	136 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	RAP1A	P62834	184 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	LTB	Q06643	244 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	CHAF1B	Q13112	559 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	SLC6A19	Q695T7	634 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	C3orf33	Q6P1S2	294 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	BAIAP2L2	Q6UXY1	529 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	LRRC28	Q86X40	367 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	ARIH2OS	Q8N7S6	290 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	ADPRHL1	Q8NDY3	354 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	OR10G3	Q8NGC4	313 aa		11.41	□□□□□ -0.58
SHMT2-229	ENST00000557348	OR4K17	Q8NGC6	315 aa		11.41	□□□□□ -0.58

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