RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	WIPI2	Q9Y4P8	454 aa		10.79	□□□□□ -0.68
SHMT2-223	ENST00000556689	PPIAL4A	Q9Y536	164 aa		10.79	□□□□□ -0.68
SHMT2-223	ENST00000556689	TRRAP	Q9Y4A5	3859 aa		10.79	□□□□□ -0.68
SHMT2-223	ENST00000556689	IGLV3-9	A0A075B6K5	115 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	CLDN25	C9JDP6	229 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	SDHD	O14521	159 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	HDAC3	O15379	428 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	SHOX2	O60902	331 aa	Predicted RBP	10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	ENTPD5	O75356	428 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	SLC22A3	O75751	556 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	TGDS	O95455	350 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	PTH	P01270	115 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	LCK	P06239	509 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	OR8G3P	P0DMU2	310 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	AHCY	P23526	432 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	CSNK1A1	P48729	337 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	PUDP	Q08623	228 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	RBBP4	Q09028	425 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	HFE	Q30201	348 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	FAM91A1	Q658Y4	838 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	TREML4	Q6UXN2	200 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	RETREG3	Q86VR2	466 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	WDFY1	Q8IWB7	410 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	SLC30A7	Q8NEW0	376 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	BBS10	Q8TAM1	723 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	ZNF519	Q8TB69	540 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	ITCH	Q96J02	903 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	TSPAN32	Q96QS1	320 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	RMND5A	Q9H871	391 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	CDH20	Q9HBT6	801 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	NPHS2	Q9NP85	383 aa		10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	MRPL39	Q9NYK5	338 aa	Known RBP	10.78	□□□□□ -0.68
SHMT2-223	ENST00000556689	PLPP3	O14495	311 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	NDUFAB1	O14561	156 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	FAM107A	O95990	144 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	BGLAP	P02818	100 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	MT-ND5	P03915	603 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	ARAF	P10398	606 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	CCL2	P13500	99 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	ETS2	P15036	469 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	HTR2A	P28223	471 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	PRKAR1B	P31321	381 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	UCP2	P55851	309 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	RGN	Q15493	299 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	TST	Q16762	297 aa	Known RBP	10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	GTDC1	Q4AE62	458 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	USP51	Q70EK9	711 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC22A24	Q8N4F4	322 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	C10orf53	Q8N6V4	93 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	DVL3	Q92997	716 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	MAL2	Q969L2	176 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	VPS33A	Q96AX1	596 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	BCL2L14	Q9BZR8	327 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR51B6	Q9H340	312 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	WDR55	Q9H6Y2	383 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	RNF121	Q9H920	327 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM27	Q9HBJ8	222 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	A4GALT	Q9NPC4	353 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLCO1B3	Q9NPD5	702 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	GLTP	Q9NZD2	209 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	TRIM33	Q9UPN9	1127 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	USH1C	Q9Y6N9	552 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689	PKD1L1	Q8TDX9	2849 aa		10.77	□□□□□ -0.69
SHMT2-223	ENST00000556689		A0A0G2JND7	137 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	POM121C	A8CG34	1229 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	C5orf58	C9J3I9	102 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	CLIC1	O00299	241 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	SERPINI2	O75830	405 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR6A2	O95222	327 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	FARS2	O95363	451 aa	Known RBP	10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	FSHB	P01225	129 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	NUDT7	P0C024	238 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	IDO1	P14902	403 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	DRD4	P21917	467 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	PRTN3	P24158	256 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	EPHA3	P29320	983 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	BID	P55957	195 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	LCN2	P80188	198 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	TBC1D28	Q2M2D7	210 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	C6orf10	Q5SRN2	563 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM53	Q6P2H8	277 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	WDR88	Q6ZMY6	472 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	MSANTD1	Q6ZTZ1	278 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	DPPA2	Q7Z7J5	298 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	LRRC17	Q8N6Y2	441 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	SIGLECL1	Q8N7X8	197 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR1J2	Q8NGS2	313 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR6X1	Q8NH79	312 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	CCL17	Q92583	94 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM54	Q969K7	222 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	LRRC58	Q96CX6	371 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	ELMOD3	Q96FG2	381 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	MOGAT1	Q96PD6	335 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	GPA33	Q99795	319 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	SH3GL3	Q99963	347 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	GAL3ST1	Q99999	423 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	RSPO3	Q9BXY4	272 aa	Predicted RBP	10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	LRMDA	Q9H2I8	198 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	C1orf198	Q9H425	327 aa		10.76	□□□□□ -0.69

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