RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MLXQ9UH92 298 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 A0A1W2PPC4 97 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 GPR171O14626 319 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 TPOP07202 933 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CDK5R1Q15078 307 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 EEF1A1P5Q5VTE0 462 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 SLC18B1Q6NT16 456 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 DPY19L2P2Q6ZN68 376 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 TPRA1Q86W33 373 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 BPHLQ86WA6 291 aaPredicted RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 GRAMD2AQ8IUY3 354 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 NT5CQ8TCD5 201 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 APOBEC4Q8WW27 367 aaKnown RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 MR1Q95460 341 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CRB3Q9BUF7 120 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 C1QTNF6Q9BXI9 259 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 MCCC2Q9HCC0 563 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ANAPC1Q9H1A4 1944 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 M0QYG6 137 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 BHLHE40O14503 412 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CYB5AP00167 134 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 SLC6A1P30531 599 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 HTR4Q13639 388 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ETFDHQ16134 617 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 AANATQ16613 207 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ELP2Q6IA86 826 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CHRDL2Q6WN34 429 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ZNF283Q8N7M2 679 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 SLC2A12Q8TD20 617 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ZNF436Q9C0F3 470 aaPredicted RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 POMT2Q9UKY4 750 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 TMEM14AQ9Y6G1 99 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 SNRNP200O75643 2136 aaKnown RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 FAM221BA6H8Z2 402 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ECDO95905 644 aaPredicted RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 EPXP11678 715 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 AKR1C4P17516 323 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CD300LDQ6UXZ3 194 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 PDZD9Q8IXQ8 264 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ZBTB44Q8NCP5 570 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ZNF417Q8TAU3 575 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 ZNF587Q96SQ5 575 aaPredicted RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 ALKBH4Q9NXW9 302 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 TAS2R3Q9NYW6 316 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 CTSFQ9UBX1 484 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 COA3Q9Y2R0 106 aaPredicted RBP13.53□□□□□ -0.24
CUX1-215ENST00000556210 PLXNA3P51805 1871 aa13.53□□□□□ -0.24
CUX1-215ENST00000556210 TMEM269A0A1B0GVZ9 245 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 GOSR2O14653 212 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 DIO1P49895 249 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 SLC35F3Q8IY50 421 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 SEC22AQ96IW7 307 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 LPAR4Q99677 370 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 C20orf85Q9H1P6 137 aa13.52□□□□□ -0.24
CUX1-215ENST00000556210 PRSS3P35030 304 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 ZNF85Q03923 595 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 RAB11BQ15907 218 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 FAM122CQ6P4D5 195 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 OR10AC1Q8NH08 325 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 C3orf49Q96BT1 292 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 GSKIPQ9P0R6 139 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 HS3ST3A1Q9Y663 406 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 MDC1Q14676 2089 aaKnown RBP13.52□□□□□ -0.25
CUX1-215ENST00000556210 A0A087WV62 115 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 EEF1E1-BLOC1S5C9J1V9 151 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 F5H5K5 113 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 ZNF217O75362 1048 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 RGS11O94810 467 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 NKX2-2O95096 273 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 NGFRP08138 427 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 CDK2P24941 298 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 CLRN1P58418 232 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 SCRN3Q0VDG4 424 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 ACKR1Q16570 336 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 GLT8D1Q68CQ7 371 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 TMPRSS11FQ6ZWK6 438 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 MDGA2Q7Z553 956 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 LSMEM1Q8N8F7 131 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 OR11H7Q8NGC8 314 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 OR52B4Q8NGK2 314 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 SMIM19Q96E16 107 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 OR6C1Q96RD1 312 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 SUSD2Q9UGT4 822 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 PILRAQ9UKJ1 303 aa13.52□□□□□ -0.25
CUX1-215ENST00000556210 TRBV11-1A0A0K0K1C0 115 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 ADAM11O75078 769 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 GUCA2AQ02747 115 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 ZC3HAV1LQ96H79 300 aaKnown RBP13.51□□□□□ -0.25
CUX1-215ENST00000556210 GABRG3Q99928 467 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 LMF2Q9BU23 707 aaKnown RBP13.51□□□□□ -0.25
CUX1-215ENST00000556210 TMED7-TICAM2A0A0A6YYA0 188 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 VSTM2BA6NLU5 285 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 GLCEO94923 617 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 AKR7A3O95154 331 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 EMP2P54851 167 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 GLYATL3Q5SZD4 288 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 RAET1LQ5VY80 246 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 BTN2A1Q7KYR7 527 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 CLEC1BQ9P126 229 aa13.51□□□□□ -0.25
CUX1-215ENST00000556210 TMED7Q9Y3B3 224 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms