RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SPIBQ01892 262 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 SEC23BQ15437 767 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 HIST3H3Q16695 136 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 GSG1Q2KHT4 349 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TMPRSS11FQ6ZWK6 438 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 RRM2BQ7LG56 351 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TRPM8Q7Z2W7 1104 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 YTHDF3Q7Z739 585 aaKnown RBP11.93□□□□□ -0.5
SHMT2-219ENST00000555563 CDK20Q8IZL9 346 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 ARHGAP24Q8N264 748 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 OR4K5Q8NGD3 323 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 OR52J3Q8NH60 311 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 NANOS1Q8WY41 292 aaKnown RBP11.93□□□□□ -0.5
SHMT2-219ENST00000555563 HTRA1Q92743 480 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 HDAC2Q92769 488 aaKnown RBP11.93□□□□□ -0.5
SHMT2-219ENST00000555563 MCHR2Q969V1 340 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 GTPBP3Q969Y2 492 aaKnown RBP11.93□□□□□ -0.5
SHMT2-219ENST00000555563 MCUR1Q96AQ8 359 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 KCNS3Q9BQ31 491 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 FUZQ9BT04 418 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TMUB1Q9BVT8 246 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TXNIPQ9H3M7 391 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TMEM38BQ9NVV0 291 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 B3GNT2Q9NY97 397 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 ACTR3BQ9P1U1 418 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 STX18Q9P2W9 335 aaKnown RBP11.93□□□□□ -0.5
SHMT2-219ENST00000555563 TMEM5Q9Y2B1 443 aa11.93□□□□□ -0.5
SHMT2-219ENST00000555563 CRYAAP02489 173 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 FABP3P05413 133 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 CD79AP11912 226 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 CD99P14209 185 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF26P17031 533 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-219ENST00000555563 CALCRP30988 508 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 OMPP47874 163 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 CTXN1P60606 82 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 FMODQ06828 376 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 PIGFQ07326 219 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 ANKDD1AQ495B1 522 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 AGAP6Q5VW22 663 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF544Q6NX49 715 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 MUC15Q8N387 334 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 CCDC124Q96CT7 223 aaKnown RBP11.92□□□□□ -0.5
SHMT2-219ENST00000555563 NMD3Q96D46 503 aaKnown RBP11.92□□□□□ -0.5
SHMT2-219ENST00000555563 POM121Q96HA1 1249 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 TSPAN32Q96QS1 320 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 TNFRSF13CQ96RJ3 184 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 KCNK17Q96T54 332 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 GRIP2Q9C0E4 1043 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 MUC13Q9H3R2 512 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 IL1RAPQ9NPH3 570 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 DLL4Q9NR61 685 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 TAS2R1Q9NYW7 299 aa11.92□□□□□ -0.5
SHMT2-219ENST00000555563 PRPF19Q9UMS4 504 aaKnown RBP11.92□□□□□ -0.5
SHMT2-219ENST00000555563 IGKV1D-43A0A0B4J1Z2 117 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 IGHV2OR16-5A0A0B4J2B6 119 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 TCRBV5S2A0A599 114 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 SH3PXD2BA1X283 911 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 UBOX5O94941 541 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 UBL3O95164 117 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 GADD45GO95257 159 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 SLC2A10O95528 541 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 GIPRP48546 466 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 FABP6P51161 128 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF133P52736 654 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 RPL27P61353 136 aaKnown RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ERVK-25P63136 954 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 CD47Q08722 323 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 TAF11Q15544 211 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ZBED5Q49AG3 693 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 C10orf128Q5T292 105 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 FAM205BPQ63HN1 556 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 C11orf71Q6IPW1 123 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 LCN8Q6JVE9 175 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 PRSS57Q6UWY2 283 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 PIWIL3Q7Z3Z3 882 aaKnown RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ZDHHC21Q8IVQ6 265 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 SKA3Q8IX90 412 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 FBXL14Q8N1E6 418 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 SLC22A24Q8N4F4 322 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 CLDN22Q8N7P3 220 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 FGFBP3Q8TAT2 258 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF519Q8TB69 540 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 MS4A3Q96HJ5 214 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 RSRC1Q96IZ7 334 aaKnown RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 CLPTM1LQ96KA5 538 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 Q96MF0 132 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 SMURF2Q9HAU4 748 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 KRCC1Q9NPI7 259 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 CBLN4Q9NTU7 201 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF346Q9UL40 294 aaKnown RBP11.91□□□□□ -0.5
SHMT2-219ENST00000555563 ADAM18Q9Y3Q7 739 aa11.91□□□□□ -0.5
SHMT2-219ENST00000555563 USF3Q68DE3 2245 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 NF1P21359 2839 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 RAB36O95755 333 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 PATE4P0C8F1 98 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 OR8G3PP0DMU2 310 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF14P17017 642 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-219ENST00000555563 RRM2P31350 389 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 RPL4P36578 427 aaKnown RBP11.9□□□□□ -0.5
SHMT2-219ENST00000555563 ACVR1BP36896 505 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms