RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 NAAAQ02083 359 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 HGFACQ04756 655 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 DGCR6Q14129 220 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 HIST3H3Q16695 136 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 ALG10Q5BKT4 473 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 C11orf71Q6IPW1 123 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 OAFQ86UD1 273 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 DTX2Q86UW9 622 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CYP4Z1Q86W10 505 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 LRRC75A-AS1Q8N1F1 130 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 MCHR2Q969V1 340 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 NMD3Q96D46 503 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 FAM46AQ96IP4 442 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 DHRS1Q96LJ7 313 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 NSMCE2Q96MF7 247 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF75AQ96N20 296 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 DHRS9Q9BPW9 319 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 FUZQ9BT04 418 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CXorf56Q9H5V9 222 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF346Q9UL40 294 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 SAMD4AQ9UPU9 718 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 FAM32AQ9Y421 112 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 ARFGEF3Q5TH69 2177 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 IGHV2OR16-5A0A0B4J2B6 119 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 H7C1C5 153 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 IMPA2O14732 288 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 ARHGEF9O43307 516 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 IGKV3-15P01624 115 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 IGHV4-39P01824 125 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 IGHG1P01857 330 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 HOXB1P14653 301 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 PAX1P15863 534 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 MNAT1P51948 309 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 LCN6P62502 163 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 ERVK-25P63136 954 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 DBPQ10586 325 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 MST1LQ2TV78 715 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 SHEQ5VZ18 495 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 VHLLQ6RSH7 139 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF627Q7L945 461 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 RNF113BQ8IZP6 322 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 NOXO1Q8NFA2 376 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 OR4K5Q8NGD3 323 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 BCAS4Q8TDM0 211 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 NSMAFQ92636 917 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 TSPAN32Q96QS1 320 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 SEPHS2Q99611 448 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 TXNIPQ9H3M7 391 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 TMEM38BQ9NVV0 291 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 TAS2R1Q9NYW7 299 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 IL20RAQ9UHF4 553 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 ADAM18Q9Y3Q7 739 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 UGT2A1Q9Y4X1 527 aa10.05□□□□□ -0.8
CCDC88C-208ENST00000554165 C2CD3Q4AC94 2353 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 NF1P21359 2839 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 TCRBV5S2A0A599 114 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 H7C1Q1 480 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 UBOX5O94941 541 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 CRYAAP02489 173 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 ACVR1BP36896 505 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 OMPP47874 163 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 LIMS1P48059 325 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 GIPRP48546 466 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 PTDSS1P48651 473 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC9A3P48764 834 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 DAP3P51398 398 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 FXYD6P3P58550 94 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 RPL27P61353 136 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 SPIBQ01892 262 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 RAB39AQ14964 217 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 MSMPQ1L6U9 139 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 GSG1Q2KHT4 349 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 ZBED5Q49AG3 693 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 THSD4Q6ZMP0 1018 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 TMPRSS11FQ6ZWK6 438 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 Q71RC1 249 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 FBXL14Q8N1E6 418 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 DEPDC4Q8N2C3 294 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 MUC15Q8N387 334 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC22A24Q8N4F4 322 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 FAM169BQ8N8A8 192 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF519Q8TB69 540 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 FBXO17Q96EF6 278 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 Q96M85 177 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 KCNK17Q96T54 332 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 KATNB1Q9BVA0 655 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 CACNG6Q9BXT2 260 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 ANKRD19PQ9H560 264 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 CBLN4Q9NTU7 201 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 NDE1Q9NXR1 346 aa10.04□□□□□ -0.8
CCDC88C-208ENST00000554165 SH3PXD2BA1X283 911 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 SMAD7O15105 426 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 PTP4A3O75365 173 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 LY6HO94772 140 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 SCG5P05408 212 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 FABP3P05413 133 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF14P17017 642 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 CALB2P22676 271 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 THBS4P35443 961 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ARR3P36575 388 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 161.1 ms