RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 NPRL3Q12980 569 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 CALCOCO2Q13137 446 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 GTF2H2Q13888 395 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SCARB2Q14108 478 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 QPRTQ15274 297 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 OR4D1Q15615 310 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 CCDC92Q53HC0 331 aaPredicted RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 KLHL26Q53HC5 615 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SYT14P1Q58G82 188 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SGO1Q5FBB7 561 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 BEND6Q5SZJ8 279 aaPredicted RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 RNASEH2BQ5TBB1 312 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TMEM225Q6GV28 225 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 DHRS7BQ6IAN0 325 aaPredicted RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 GTF2H2CQ6P1K8 395 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TTC27Q6P3X3 843 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 USP51Q70EK9 711 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 KCTD20Q7Z5Y7 419 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 ZC3HC1Q86WB0 502 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 RFWD2Q8NHY2 731 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 AENQ8WTP8 325 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 UBTD2Q8WUN7 234 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 RAB40AQ8WXH6 277 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 C11orf40Q8WZ69 217 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 PIK3R3Q92569 461 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 R3HDM4Q96D70 268 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 FAM120BQ96EK7 910 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 THOC1Q96FV9 657 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 AJUBAQ96IF1 538 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 ERP44Q9BS26 406 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 ACTRT3Q9BYD9 372 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TRIM15Q9C019 465 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 DPH5Q9H2P9 285 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 GSTO2Q9H4Y5 243 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 VIPAS39Q9H9C1 493 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SAP30LQ9HAJ7 183 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 PATZ1Q9HBE1 687 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 LIN7CQ9NUP9 197 aaKnown RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 ETAA1Q9NY74 926 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TAS2R7Q9NYW3 318 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TMEM181Q9P2C4 612 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 VPS29Q9UBQ0 182 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SLC25A10Q9UBX3 287 aaPredicted RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 FBXL3Q9UKT7 428 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 TMEM5Q9Y2B1 443 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 FLVCR1Q9Y5Y0 555 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 SOX21Q9Y651 276 aaPredicted RBP4.33□□□□□ -1.72
CKAP4-203ENST00000553039 USH1CQ9Y6N9 552 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 DOCK11Q5JSL3 2073 aa4.33□□□□□ -1.72
CKAP4-203ENST00000553039 KIR2DS1A0A191URI9 304 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 MDFIC2A0A1B0GVS7 189 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ANKRD61A6NGH8 418 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 RNASEK-C17orf49H0YIS7 233 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ETV2O00321 342 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 AP3D1O14617 1153 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TNFRSF13BO14836 293 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ZNF264O43296 627 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 NCR1O76036 304 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 SEC31AO94979 1220 aaKnown RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 VAMP5O95183 116 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TGDSO95455 350 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 H6PDO95479 791 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 BAG2O95816 211 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 IFNW1P05000 195 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 HNRNPCP07910 306 aaKnown RBP eCLIP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 UBL4AP11441 157 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ZNF35P13682 527 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 GFAPP14136 432 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 STMN1P16949 149 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 DRD4P21917 467 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 NTSP30990 170 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 GABRA5P31644 462 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 MSX2P35548 267 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 LIPAP38571 399 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 IER3P46695 156 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 CCNG1P51959 295 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 PRKAG1P54619 331 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TUBA1BP68363 451 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TUBA4AP68366 448 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 RPP30P78346 268 aaKnown RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 FHL3Q13643 280 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 FRG1Q14331 258 aaKnown RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 CASP8Q14790 479 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 SLC17A1Q14916 467 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 MAD2L1BPQ15013 274 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 RASA2Q15283 850 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 CD226Q15762 336 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TOMM34Q15785 309 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ZIK1Q3SY52 487 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TMEM155Q4W5P6 130 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 NKAPLQ5M9Q1 402 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 RGS7BPQ6MZT1 257 aaPredicted RBP4.32□□□□□ -1.72
CKAP4-203ENST00000553039 PLBD1Q6P4A8 553 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 CBLN3Q6UW01 205 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 C6orf89Q6UWU4 347 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TMEM107Q6UX40 140 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 TUBA1AQ71U36 451 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 RNF144BQ7Z419 303 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 CPLX4Q7Z7G2 160 aa4.32□□□□□ -1.72
CKAP4-203ENST00000553039 ISCA2Q86U28 154 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms