RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 MAGEE2Q8TD90 523 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 GNPDA2Q8TDQ7 276 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 HTRA1Q92743 480 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 MCHR2Q969V1 340 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 Q96M85 177 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 KCNK17Q96T54 332 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 FOXB1Q99853 325 aa12.34□□□□□ -0.43
PTCH1-226ENST00000553011 ESRP2Q9H6T0 727 aaKnown RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 CCM2LQ9NUG4 571 aaPredicted RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 STX18Q9P2W9 335 aaKnown RBP12.34□□□□□ -0.43
PTCH1-226ENST00000553011 CSMD1Q96PZ7 3565 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 ARPC4-TTLL3A0A0A6YYG9 625 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 IGKV1D-43A0A0B4J1Z2 117 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF503-AS2A6NEH8 195 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 CENPBD1B2RD01 187 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 M0R1B8 84 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 CIB2O75838 187 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 SLC2A10O95528 541 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 WNT11O96014 354 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 GASTP01350 101 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 CD3EP07766 207 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 UBE2NP61088 152 aaKnown RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 FMODQ06828 376 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 CD47Q08722 323 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 TSPAN31Q12999 210 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 MICAQ29983 383 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 FAM205BPQ63HN1 556 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 SMARCD3Q6STE5 483 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF704Q6ZNC4 412 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 SSX8Q7RTT4 187 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 FAM122BQ7Z309 247 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 LINC00471Q8N535 108 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 ARIH2OSQ8N7S6 290 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 AQP11Q8NBQ7 271 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 RASD2Q96D21 266 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 NMD3Q96D46 503 aaKnown RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 SAMD8Q96LT4 415 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 GPX7Q96SL4 187 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 TMEM204Q9BSN7 226 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 NDEL1Q9GZM8 345 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 OR52D1Q9H346 318 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 OBP2BQ9NPH6 170 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 NRIP3Q9NQ35 241 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 GRHPRQ9UBQ7 328 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 IER3IP1Q9Y5U9 82 aa12.33□□□□□ -0.44
PTCH1-226ENST00000553011 MAGED1Q9Y5V3 778 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 MAP1AP78559 2803 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-226ENST00000553011 TEX13CA0A0J9YWL9 993 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 A6NIZ1 184 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 H7C1C5 153 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 GNGT2O14610 69 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ARHGEF9O43307 516 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 TIPRLO75663 272 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 PPP1R3DO95685 299 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 HOXB1P14653 301 aaPredicted RBP12.32□□□□□ -0.44
PTCH1-226ENST00000553011 HOXB6P17509 224 aaKnown RBP12.32□□□□□ -0.44
PTCH1-226ENST00000553011 CAPZA2P47755 286 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF133P52736 654 aaPredicted RBP12.32□□□□□ -0.44
PTCH1-226ENST00000553011 RAP1BP61224 184 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 LCN6P62502 163 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 RAP1AP62834 184 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 SPOCK1Q08629 439 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 KRR1Q13601 381 aaKnown RBP12.32□□□□□ -0.44
PTCH1-226ENST00000553011 RFX4Q33E94 735 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 MESTQ5EB52 335 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 C10orf128Q5T292 105 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ADAM5Q6NVV9 412 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 SLC25A47Q6Q0C1 308 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 KLHL17Q6TDP4 642 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF620Q6ZNG0 422 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF627Q7L945 461 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 CDH24Q86UP0 819 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 OR10G2Q8NGC3 310 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 NEUROG1Q92886 237 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 GTPBP3Q969Y2 492 aaKnown RBP12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ZNF570Q96NI8 536 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 ALG12Q9BV10 488 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 YY1AP1Q9H869 796 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 UBTD1Q9HAC8 227 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 TMEM38BQ9NVV0 291 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 RNF115Q9Y4L5 304 aa12.32□□□□□ -0.44
PTCH1-226ENST00000553011 CSMD2Q7Z408 3487 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 SOCS2O14508 198 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 ABCD4O14678 606 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 HLA-HP01893 362 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 CD40P25942 277 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 SDHAP31040 664 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 SLC6A6P31641 620 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 C1QTNF12Q5T7M4 302 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 TMEM108Q6UXF1 575 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 DPY19L2P2Q6ZN68 376 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 HS3ST5Q8IZT8 346 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 KBTBD8Q8NFY9 601 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 GIPC3Q8TF64 312 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 NSMAFQ92636 917 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 RBP7Q96R05 134 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 DGCR6LQ9BY27 220 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 PLA2G12AQ9BZM1 189 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 EGLN3Q9H6Z9 239 aa12.31□□□□□ -0.44
PTCH1-226ENST00000553011 SEC61A2Q9H9S3 476 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms