RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PRSS12P56730 875 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 H2BFSP57053 126 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ETFDHQ16134 617 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 WDR38Q5JTN6 314 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PRAMEF17Q5VTA0 474 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF626Q68DY1 528 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ASPHD2Q6ICH7 369 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM65Q6PI78 240 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 MDGA2Q7Z553 956 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 CDH24Q86UP0 819 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF595Q8IYB9 648 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 FAM160A2Q8N612 972 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 DEFB119Q8N690 84 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF563Q8TA94 476 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PHYHIPQ92561 330 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TSLPQ969D9 159 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 GINS4Q9BRT9 223 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 OR8D2Q9GZM6 311 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 SLITRK2Q9H156 845 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 FBRSQ9HAH7 460 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TAS2R5Q9NYW4 299 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 AKAP7Q9P0M2 348 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 GTF2A1LQ9UNN4 478 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 SLC22A13Q9Y226 551 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 MRPS33Q9Y291 106 aaKnown RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 SLC6A5Q9Y345 797 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 FREM2Q5SZK8 3169 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 MED12Q93074 2177 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 OR2M5A3KFT3 312 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 NAP1L6A6NFF2 107 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CLDN4O14493 209 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ARPC5O15511 151 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF264O43296 627 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CREBL2O60519 120 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PRAF2O60831 178 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ICOSLGO75144 302 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 UTS2O95399 124 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 GUSBP08236 651 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RAB40ALP0C0E4 278 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RRASP10301 218 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 IFNGR1P15260 489 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ALOX5APP20292 161 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RABIFP47224 123 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 OR1D4P47884 311 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CENPAP49450 140 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SLC25A1P53007 311 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PSMD4P55036 377 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 AP3S2P59780 193 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MELKQ14680 651 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ISXQ2M1V0 245 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 DCAF12L2Q5VW00 463 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SLC6A19Q695T7 634 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 OR8S1Q8NH09 359 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PTPMT1Q8WUK0 201 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RLN3Q8WXF3 142 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RAB40AQ8WXH6 277 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 WBP1Q96G27 269 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MRPL48Q96GC5 212 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 TOE1Q96GM8 510 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CXorf58Q96LI9 332 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 GAL3ST4Q96RP7 486 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 LRRC61Q9BV99 259 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 GSX2Q9BZM3 304 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CHST6Q9GZX3 395 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 EVA1AQ9H8M9 152 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 UBQLN4Q9NRR5 601 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MYEF2Q9P2K5 600 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 GMEB2Q9UKD1 530 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SPEF1Q9Y4P9 236 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MAB21L2Q9Y586 359 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 HS3ST3A1Q9Y663 406 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SPAG17Q6Q759 2223 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CABIN1Q9Y6J0 2220 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 IGHV5-51A0A0C4DH38 117 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CHURC1-FNTBB4DL54 471 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PRAMEF26H0Y7S4 382 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 L7N2F9 121 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SCDO00767 359 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SULT1B1O43704 296 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF254O75437 659 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CTAG2O75638 210 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 NSA2O95478 260 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PNPP00491 289 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 HLA-DQA2P01906 255 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RLN1P04808 185 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CCKBRP32239 447 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 FNTBP49356 437 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SLC37A1P57057 533 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 FOXL2P58012 376 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF117Q03924 483 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 IKZF1Q13422 519 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MEP1BQ16820 701 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 OR7E24Q6IFN5 339 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ALKAL2Q6UX46 152 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 Q6ZS52 159 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 PLPP7Q8NBV4 271 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 TSEN15Q8WW01 171 aaKnown RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 SLC25A36Q96CQ1 311 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 TGM7Q96PF1 710 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms