RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 HSPB3Q12988 150 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 LCP2Q13094 533 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 TRAF3Q13114 568 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 TP53BP2Q13625 1128 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 MAD2L1BPQ15013 274 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 LARS2Q15031 903 aaKnown RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 DUSP5Q16690 384 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CCNJQ5T5M9 372 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 GRTP1Q5TC63 336 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 LRRN1Q6UXK5 716 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 Q6YL49 198 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 USP51Q70EK9 711 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CYS1Q717R9 158 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 TUBA1AQ71U36 451 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 GRINAQ7Z429 371 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 SPARTQ8N0X7 666 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 LNX2Q8N448 690 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 GALNT4Q8N4A0 578 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ZNF614Q8N883 585 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 PTGR2Q8N8N7 351 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ATG16L2Q8NAA4 619 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 FBXO36Q8NEA4 188 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 OR4S1Q8NGB4 309 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CDC26Q8NHZ8 85 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ZNF563Q8TA94 476 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 OIT3Q8WWZ8 545 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 PHF21AQ96BD5 680 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 UPRTQ96BW1 309 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 KTI12Q96EK9 354 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ZNF503Q96F45 646 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ALKBH3Q96Q83 286 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 BAG1Q99933 345 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 THUMPD3Q9BV44 507 aaKnown RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CCDC106Q9BWC9 280 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 ACTRT3Q9BYD9 372 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 LINC00470Q9BZP3 86 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CHIAQ9BZP6 476 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 NMUR2Q9GZQ4 415 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 PIGUQ9H490 435 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 DENND2DQ9H6A0 471 aaPredicted RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 MMP26Q9NRE1 261 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 SLC6A13Q9NSD5 602 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 FARSBQ9NSD9 589 aaKnown RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 TAAR3PQ9P1P4 343 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 KIF17Q9P2E2 1029 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 CPSF2Q9P2I0 782 aaKnown RBP3.43□□□□□ -1.86
SNHG1-220ENST00000544550 SLC7A8Q9UHI5 535 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 PCTPQ9UKL6 214 aa3.43□□□□□ -1.86
SNHG1-220ENST00000544550 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 TRAV40A0A0B4J280 105 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 MDFIC2A0A1B0GVS7 189 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 UNC119BA6NIH7 251 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 AQP12BA6NM10 295 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 SMIM24O75264 130 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 KLHL2O95198 593 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 RAB36O95755 333 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 AK1P00568 194 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 CSTAP01040 98 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 GPIP06744 558 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 RBP1P09455 135 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 NHLRC4P0CG21 123 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 IGHV4-38-2P0DP08 117 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 EGR2P11161 476 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 BCKDHAP12694 445 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 ZNF35P13682 527 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 CXCR5P32302 372 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 STX2P32856 288 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 KLF3P57682 345 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 KRTAP10-2P60368 255 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 ROR2Q01974 943 aaKnown RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 PAX8Q06710 450 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 PDIA2Q13087 525 aaKnown RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 SKP2Q13309 424 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 FHL3Q13643 280 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 HERPUD1Q15011 391 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 RASA2Q15283 850 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 GSG1Q2KHT4 349 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 DEFB112Q30KQ8 113 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 TMEM155Q4W5P6 130 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 ESCO2Q56NI9 601 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 TTMPQ5BVD1 217 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 DEFB121Q5J5C9 76 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 DCST2Q5T1A1 773 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 GPR157Q5UAW9 335 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 PRAMEF8Q5VWM4 474 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 PRAMEF7Q5VXH5 474 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 FAM71E1Q6IPT2 247 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 CDC73Q6P1J9 531 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 NIPAL3Q6P499 406 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 C11orf88Q6PI97 169 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 CCBE1Q6UXH8 406 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 EIF3MQ7L2H7 374 aaKnown RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 CMC1Q7Z7K0 106 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 GPAT4Q86UL3 456 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 MDP1Q86V88 176 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 MYPOPQ86VE0 399 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 ZSCAN4Q8NAM6 433 aaPredicted RBP3.42□□□□□ -1.86
SNHG1-220ENST00000544550 OR9K2Q8NGE7 335 aa3.42□□□□□ -1.86
SNHG1-220ENST00000544550 OR10S1Q8NGN2 331 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms