RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SCARB2Q14108 478 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 NRN1LQ496H8 165 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 LRFN4Q6PJG9 635 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 BLOC1S3Q6QNY0 202 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 EPGNQ6UW88 154 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 THSD4Q6ZMP0 1018 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 SLC35D2Q76EJ3 337 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 C1QL2Q7Z5L3 287 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 RANBP3LQ86VV4 465 aaPredicted RBP11.58□□□□□ -0.56
SS18-204ENST00000539244 PAQR4Q8N4S7 273 aaPredicted RBP11.58□□□□□ -0.56
SS18-204ENST00000539244 C10orf53Q8N6V4 93 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 ZNF519Q8TB69 540 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 SYNPRQ8TBG9 265 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 RNF217Q8TC41 542 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 RAB39BQ96DA2 213 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 SLC25A44Q96H78 314 aaPredicted RBP11.58□□□□□ -0.56
SS18-204ENST00000539244 TMPRSS13Q9BYE2 586 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 TAS2R5Q9NYW4 299 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 VAPAQ9P0L0 249 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 CORO2BQ9UQ03 480 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 LOC105371242A0A075B767 164 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 A0A0G2JMP0 313 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 A0A0X1KG70 313 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 C11orf98E9PRG8 122 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 J3QLI3 93 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 DHHO43323 396 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 PLPP2O43688 288 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 CHP2O43745 196 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 MFN2O95140 757 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 MPZL1O95297 269 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 FARS2O95363 451 aaKnown RBP11.57□□□□□ -0.56
SS18-204ENST00000539244 FAM157BP0CG42 384 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 PGA4P0DJD7 388 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 PGA3P0DJD8 388 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 SLC6A2P23975 617 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 PCBP3P57721 371 aaKnown RBP11.57□□□□□ -0.56
SS18-204ENST00000539244 STX1BP61266 288 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 TEKQ02763 1124 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 RBBP4Q09028 425 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 ZNF74Q16587 644 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 ALKBH6Q3KRA9 238 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 PAGE3Q5JUK9 113 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 TMEM154Q6P9G4 183 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 ARMC8Q8IUR7 673 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 HIPK4Q8NE63 616 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 OR4M2Q8NGB6 313 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 SNX33Q8WV41 574 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 ZNF566Q969W8 418 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 SPDL1Q96EA4 605 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 TSPAN32Q96QS1 320 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 SUCNR1Q9BXA5 334 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 BCL2L14Q9BZR8 327 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 IKZF5Q9H5V7 419 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.57□□□□□ -0.56
SS18-204ENST00000539244 SLC13A4Q9UKG4 626 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 RAB21Q9UL25 225 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 USH1CQ9Y6N9 552 aa11.57□□□□□ -0.56
SS18-204ENST00000539244 V9GYY5 206 aaPredicted RBP11.57□□□□□ -0.56
SS18-204ENST00000539244 IGHV1-69-2A0A0G2JMI3 117 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 MGRN1O60291 552 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 CDC14BO60729 498 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 RGS9O75916 674 aaPredicted RBP11.56□□□□□ -0.56
SS18-204ENST00000539244 OR6A2O95222 327 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 PTHP01270 115 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 IGHV2-5P01817 119 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 GATA3P23771 443 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 RAD52P43351 418 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 UCP2P55851 309 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 ERVS71-1P61550 626 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 HIST3H3Q16695 136 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 SLC36A2Q495M3 483 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 AVPI1Q5T686 147 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 TMEM53Q6P2H8 277 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 OR1J2Q8NGS2 313 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 C11orf40Q8WZ69 217 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 MCHR1Q99705 422 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 ARHGDIGQ99819 225 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 SH3GL3Q99963 347 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 ZNF426Q9BUY5 554 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 CDH20Q9HBT6 801 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 SLCO1B3Q9NPD5 702 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 NANSQ9NR45 359 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 WIPI2Q9Y4P8 454 aa11.56□□□□□ -0.56
SS18-204ENST00000539244 EVPLLA8MZ36 301 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 CLDN25C9JDP6 229 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 ZNF500O60304 480 aaPredicted RBP11.55□□□□□ -0.56
SS18-204ENST00000539244 ERLIN1O75477 346 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 LYPD3O95274 346 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 TGDSO95455 350 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 FSHBP01225 129 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 IGHV3-13P01766 116 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 THY1P04216 161 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 MMP7P09237 267 aaPredicted RBP11.55□□□□□ -0.56
SS18-204ENST00000539244 ASAH2BP0C7U1 165 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 CCL2P13500 99 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 AQP1P29972 269 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 ZNF133P52736 654 aaPredicted RBP11.55□□□□□ -0.56
SS18-204ENST00000539244 MVKQ03426 396 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 NPTX1Q15818 432 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 MOGQ16653 247 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms