RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ERVK-25P63136 954 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 MYBPC1Q00872 1141 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 TOP3AQ13472 1001 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF672Q499Z4 452 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-209ENST00000532725 OR2T5Q6IEZ7 315 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 ARIH2OSQ8N7S6 290 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF611Q8N823 705 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 NOXO1Q8NFA2 376 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 KBTBD8Q8NFY9 601 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 OR2T29Q8NH02 315 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF519Q8TB69 540 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 RSRC1Q96IZ7 334 aaKnown RBP17.32■□□□□ 0.36
CPSF1-209ENST00000532725 RADILQ96JH8 1075 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 CHID1Q9BWS9 393 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 B3GNT2Q9NY97 397 aa17.32■□□□□ 0.36
CPSF1-209ENST00000532725 HEATR1Q9H583 2144 aaKnown RBP17.32■□□□□ 0.36
CPSF1-209ENST00000532725 NDUFB2O95178 105 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 IGLV1-44P01699 117 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 CBR1P16152 277 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 RPL4P36578 427 aaKnown RBP17.31■□□□□ 0.36
CPSF1-209ENST00000532725 IFNGR2P38484 337 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 GSSP48637 474 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 FLOT2Q14254 428 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 TESK1Q15569 626 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 C3orf36Q3SXR2 165 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 THSD4Q6ZMP0 1018 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 C20orf204Q6ZNR8 217 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 FAM122BQ7Z309 247 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 IGFBPL1Q8WX77 278 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 GPX7Q96SL4 187 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-209ENST00000532725 ALG12Q9BV10 488 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 KATNB1Q9BVA0 655 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 NRIP3Q9NQ35 241 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 TMEM38BQ9NVV0 291 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 VNN3Q9NY84 501 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF224Q9NZL3 707 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 ADAM18Q9Y3Q7 739 aa17.31■□□□□ 0.36
CPSF1-209ENST00000532725 RAI1Q7Z5J4 1906 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-209ENST00000532725 IGHV1-18A0A0C4DH31 117 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 TCRBV3S1A0A5B6 114 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 DHRS12A0PJE2 317 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 A6NIZ1 184 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 IGKV3-15P01624 115 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 B4GALT1P15291 398 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 FPR3P25089 353 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 RAP1BP61224 184 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 RAP1AP62834 184 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 SPOCK1Q08629 439 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 PPP1R8Q12972 351 aaKnown RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 THEM4Q5T1C6 240 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 C10orf128Q5T292 105 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 FAM205BPQ63HN1 556 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF770Q6IQ21 691 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 PGBD2Q6P3X8 592 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 SLC25A47Q6Q0C1 308 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 SKA3Q8IX90 412 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 PIAS4Q8N2W9 510 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 CLDN22Q8N7P3 220 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 GNPDA2Q8TDQ7 276 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 SLC38A2Q96QD8 506 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 MMADHCQ9H3L0 296 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 MOV10Q9HCE1 1003 aaKnown RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 CISD1Q9NZ45 108 aaKnown RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 GRHPRQ9UBQ7 328 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 PRRC2AP48634 2157 aaKnown RBP17.3■□□□□ 0.36
CPSF1-209ENST00000532725 AKAP9Q99996 3911 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 PLCE1Q9P212 2302 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 DSCAMO60469 2012 aa17.3■□□□□ 0.36
CPSF1-209ENST00000532725 MAP1AP78559 2803 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-209ENST00000532725 IGKV1D-43A0A0B4J1Z2 117 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 GASTP01350 101 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 HLA-HP01893 362 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 HOXB6P17509 224 aaKnown RBP17.29■□□□□ 0.36
CPSF1-209ENST00000532725 TSPAN31Q12999 210 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 RFX4Q33E94 735 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 SMARCD3Q6STE5 483 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 SLC22A25Q6T423 547 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 DPY19L2P2Q6ZN68 376 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 MDP1Q86V88 176 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 SPATA24Q86W54 205 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 SLC22A24Q8N4F4 322 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 LINC00471Q8N535 108 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 PIGTQ969N2 578 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 Q96M85 177 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF75AQ96N20 296 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 RBP7Q96R05 134 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 FOXC2Q99958 501 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 LRMDAQ9H2I8 198 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 SMURF2Q9HAU4 748 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 IL20RAQ9UHF4 553 aa17.29■□□□□ 0.36
CPSF1-209ENST00000532725 ARHGEF9O43307 516 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 SLC2A10O95528 541 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 DANCRP0C864 163 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 OR8G3PP0DMU2 310 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 ARR3P36575 388 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 CAPZA2P47755 286 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 ART1P52961 327 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 FMODQ06828 376 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 PIGFQ07326 219 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 DEFB113Q30KQ7 82 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms