RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	DEPDC5	O75140	1603 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	IGKV1D-8	A0A087WSZ0	117 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	NCF1B	A6NI72	391 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-223	ENST00000526553	NCF1C	A8MVU1	366 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-223	ENST00000526553	CCL21	O00585	134 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	LSM1	O15116	133 aa	Known RBP	3.02	□□□□□ -1.93
CD44-223	ENST00000526553	CLOCK	O15516	846 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	MBTPS2	O43462	519 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	MGRN1	O60291	552 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	OR2F2	O95006	317 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	C1orf105	O95561	183 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	UBTFL1	P0CB47	393 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-223	ENST00000526553	EIF2S2	P20042	333 aa	Known RBP	3.02	□□□□□ -1.93
CD44-223	ENST00000526553	UGT2B15	P54855	530 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	DLX1	P56177	255 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	RAB10	P61026	200 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	SELENOT	P62341	195 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	HERPUD1	Q15011	391 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	CERS6	Q6ZMG9	384 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553		Q6ZN92	141 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	TMEM135	Q86UB9	458 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	NKAPP1	Q8N9T2	125 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	FAM184A	Q8NB25	1140 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	MARC2	Q969Z3	335 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	CMTM7	Q96FZ5	175 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	ITCH	Q96J02	903 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	OR8B4	Q96RC9	309 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	RACGAP1	Q9H0H5	632 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	C20orf85	Q9H1P6	137 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	LY9	Q9HBG7	655 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	PLGRKT	Q9HBL7	147 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	CRLF2	Q9HC73	371 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	MARCH5	Q9NX47	278 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	HOXC10	Q9NYD6	342 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	GCNT4	Q9P109	453 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	ASF1A	Q9Y294	204 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	NOTCH2	Q04721	2471 aa		3.02	□□□□□ -1.93
CD44-223	ENST00000526553	INO80	Q9ULG1	1556 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	NSG1	A0A0A6YYJ2	146 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553		A6NIZ1	184 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	OR2AG2	A6NM03	316 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	MMP23A	O75900	390 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	BBOX1	O75936	387 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	IGHV2-5	P01817	119 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	STAG3L3	P0CL85	134 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ZNF17	P17021	662 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	TCN1	P20061	433 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ATP6V1B2	P21281	511 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	SLC2A5	P22732	501 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	GABRR1	P24046	479 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	CXCR2	P25025	360 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	RFX3	P48380	749 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	GSS	P48637	474 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	KLK7	P49862	253 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	RAP1B	P61224	184 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	CSNK1G2	P78368	415 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ARFRP1	Q13795	201 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ATP6AP1	Q15904	470 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	C9orf135	Q5VTT2	229 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	TRIM40	Q6P9F5	258 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	SASS6	Q6UVJ0	657 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	TMIGD1	Q6UXZ0	262 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	IL34	Q6ZMJ4	242 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	PRSS41	Q7RTY9	318 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	PEX26	Q7Z412	305 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	TMCO2	Q7Z6W1	182 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	MKX	Q8IYA7	352 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	PIANP	Q8IYJ0	282 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ACOT11	Q8WXI4	607 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	MS4A4E	Q96PG1	132 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	GSDMA	Q96QA5	445 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ARHGDIG	Q99819	225 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	RIOK2	Q9BVS4	552 aa	Known RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	POLR2J2	Q9GZM3	115 aa	Known RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	POLR2J3	Q9H1A7	115 aa	Known RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	INPP5E	Q9NRR6	644 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	C20orf96	Q9NUD7	363 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	GPATCH2L	Q9NWQ4	482 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	TRAF3IP3	Q9Y228	551 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	CEP152	O94986	1710 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	CCDC18	Q5T9S5	1454 aa		3.01	□□□□□ -1.93
CD44-223	ENST00000526553	ZC3H13	Q5T200	1668 aa	Known RBP	3.01	□□□□□ -1.93
CD44-223	ENST00000526553	CCNB3	Q8WWL7	1395 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	PLXNC1	O60486	1568 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	KDM5D	Q9BY66	1539 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	UBR1	Q8IWV7	1749 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	GOLGA6L7	A0A1B0GV03	622 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	SPECC1L-ADORA2A	F8WAN1	911 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	GOSR2	O14653	212 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	AIM2	O14862	343 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	AGPAT2	O15120	278 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	ZNF780A	O75290	641 aa	Predicted RBP	3	□□□□□ -1.93
CD44-223	ENST00000526553	OR2J3	O76001	311 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	CT62	P0C5K7	136 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	RALB	P11234	206 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	ZNF32	P17041	273 aa		3	□□□□□ -1.93
CD44-223	ENST00000526553	ATP5C1	P36542	298 aa	Known RBP	3	□□□□□ -1.93
CD44-223	ENST00000526553	CCT6A	P40227	531 aa	Known RBP	3	□□□□□ -1.93
CD44-223	ENST00000526553	NAA10	P41227	235 aa	Predicted RBP	3	□□□□□ -1.93
CD44-223	ENST00000526553	SPAG1	Q07617	926 aa		3	□□□□□ -1.93

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