RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 LRR1Q96L50 414 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 RAB3IPQ96QF0 476 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 ALPK1Q96QP1 1244 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 OR2M2Q96R28 347 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 FOXB1Q99853 325 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 MMADHCQ9H3L0 296 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 DENND2DQ9H6A0 471 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 MAGIXQ9H6Y5 334 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 GPR35Q9HC97 309 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 IL1RAPQ9NPH3 570 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 TAS2R1Q9NYW7 299 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 GLTPQ9NZD2 209 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 FBXL3Q9UKT7 428 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 PLEKHA6Q9Y2H5 1048 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 A0A087WUU8 490 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 LOC102725191A0A1B0GVB3 256 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 A0A1W2PRQ8 180 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 MS4A18H0YCH9 400 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 H3BN98 237 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 UPK3AO75631 287 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 SEC14L2O76054 403 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 IGF2P01344 180 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 HLA-DQA2P01906 255 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 QDPRP09417 244 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ASAH2BP0C7U1 165 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 OR8G3PP0DMU2 310 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 HLA-DOBP13765 273 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 PRF1P14222 555 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ACADSP16219 412 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 COX5AP20674 150 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 PTDSS1P48651 473 aaKnown RBP7.06□□□□□ -1.28
USP40-216ENST00000485943 ERFP50548 548 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 FABP6P51161 128 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ART1P52961 327 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 RPL27P61353 136 aaKnown RBP7.06□□□□□ -1.28
USP40-216ENST00000485943 ARF1P84077 181 aaKnown RBP7.06□□□□□ -1.28
USP40-216ENST00000485943 VLDLRP98155 873 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 BSPH1Q075Z2 132 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ZP4Q12836 540 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 DGCR6Q14129 220 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ACKR1Q16570 336 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 SGCAQ16586 387 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 GSG1Q2KHT4 349 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 MS4A18Q3C1V0 323 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ZBED5Q49AG3 693 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 HIKESHIQ53FT3 197 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 C1QTNF12Q5T7M4 302 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ZBTB37Q5TC79 503 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 VHLLQ6RSH7 139 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 SMARCD3Q6STE5 483 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 WDR88Q6ZMY6 472 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ICA1LQ8NDH6 482 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 NOXO1Q8NFA2 376 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 OR10H5Q8NGA6 315 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 OR4K5Q8NGD3 323 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 OR1K1Q8NGR3 316 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 OR13C2Q8NGS9 318 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 AKAP1Q92667 903 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP40-216ENST00000485943 OTULINQ96BN8 352 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 TXNDC15Q96J42 360 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 PLEKHA8Q96JA3 519 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 CLPTM1LQ96KA5 538 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 PRSS27Q9BQR3 290 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 KATNB1Q9BVA0 655 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 IFT27Q9BW83 186 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 WNT10AQ9GZT5 417 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 TXNIPQ9H3M7 391 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 CDH20Q9HBT6 801 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 MEPEQ9NQ76 525 aaPredicted RBP7.06□□□□□ -1.28
USP40-216ENST00000485943 SLC17A5Q9NRA2 495 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 C20orf141Q9NUB4 165 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 TBC1D23Q9NUY8 699 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 FAM53CQ9NYF3 392 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 NDUFAF4Q9P032 175 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 CD300AQ9UGN4 299 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ST6GALNAC2Q9UJ37 374 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 U3KQV3 271 aa7.06□□□□□ -1.28
USP40-216ENST00000485943 ANKHD1Q8IWZ3 2542 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 SH3PXD2BA1X283 911 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 SLC22A31A6NKX4 558 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 AQP12BA6NM10 295 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 SOCS2O14508 198 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 DHHO43323 396 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 TRAF3IP2O43734 574 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 HRGP04196 525 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ITGA5P08648 1049 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 B4GALT1P15291 398 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 NPR2P20594 1047 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 GSTM3P21266 225 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 CCNOP22674 350 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 CCKARP32238 428 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 APLNRP35414 380 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ARR3P36575 388 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 IDH3GP51553 393 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 CRYBA2P53672 197 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ERVK-25P63136 954 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 LTBQ06643 244 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 PIGFQ07326 219 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 GABRA6Q16445 453 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 THEM4Q5T1C6 240 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms