RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LIPNQ5VXI9 398 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 NANOGNBQ7Z5D8 188 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 LRP11Q86VZ4 500 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 LRRC17Q8N6Y2 441 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 OR10A6Q8NH74 314 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 TSPEARQ8WU66 669 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 RASSF5Q8WWW0 418 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 TAMM41Q96BW9 452 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 SIKE1Q9BRV8 207 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 TMEM38BQ9NVV0 291 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 DUSP13Q9UII6 198 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 DHHO43323 396 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 IGHG1P01857 330 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 PGA4P0DJD7 388 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 PGA3P0DJD8 388 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 PCMT1P22061 227 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 ACHEP22303 614 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 GPR6P46095 362 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-210ENST00000472880 SEC24CP53992 1094 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 TMEM53Q6P2H8 277 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF584Q8IVC4 421 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 SLC30A7Q8NEW0 376 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 RDH5Q92781 318 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 SH3GL3Q99963 347 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF426Q9BUY5 554 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 PCDHAC1Q9H158 963 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 RNF121Q9H920 327 aa16.97■□□□□ 0.31
COL9A3-210ENST00000472880 MYEF2Q9P2K5 600 aaKnown RBP16.97■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF346Q9UL40 294 aaKnown RBP16.97■□□□□ 0.31
COL9A3-210ENST00000472880 SLC22A23A1A5C7 686 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 BCL10O95999 233 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 HPXP02790 462 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 QDPRP09417 244 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 ASAH2BP0C7U1 165 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 DVL1P1P54792 670 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-210ENST00000472880 CLRN1P58418 232 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 NKPD1Q17RQ9 610 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 VMACQ2NL98 169 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 RGS7BPQ6MZT1 257 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-210ENST00000472880 LRFN4Q6PJG9 635 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 RINLQ6ZS11 566 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 DPPA2Q7Z7J5 298 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 TSPYL5Q86VY4 417 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-210ENST00000472880 RFLNBQ8N5W9 214 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 OR4K5Q8NGD3 323 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 FGFBP3Q8TAT2 258 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 C1orf159Q96HA4 380 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 C1orf198Q9H425 327 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 NARFLQ9H6Q4 476 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 CDH20Q9HBT6 801 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 MED4Q9NPJ6 270 aa16.96■□□□□ 0.31
COL9A3-210ENST00000472880 A0A0G2JND7 137 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 B4DSR2 109 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 MCIDASD6RGH6 385 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 BLOC1S5-TXNDC5H3BN57 136 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 FAM157BP0CG42 384 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 SAGP10523 405 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-210ENST00000472880 NAT2P11245 290 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 ZNF84P51523 738 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 SELENOVP59797 346 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 SLC36A2Q495M3 483 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 HDDC2Q7Z4H3 204 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 GLCCI1Q86VQ1 547 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 NOXO1Q8NFA2 376 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 GPR160Q9UJ42 338 aa16.95■□□□□ 0.3
COL9A3-210ENST00000472880 A0A1W2PRG6 482 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 HAX1O00165 279 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 TCF21O43680 179 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 PTHP01270 115 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 COL8A2P25067 703 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 TBC1D28Q2M2D7 210 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 ALKBH6Q3KRA9 238 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 NRN1LQ496H8 165 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 CCDC80Q76M96 950 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 SLC16A14Q7RTX9 510 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 CARM1Q86X55 608 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 CLDND2Q8NHS1 167 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 SNX33Q8WV41 574 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 PRSS27Q9BQR3 290 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 OR51B6Q9H340 312 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 MEPEQ9NQ76 525 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-210ENST00000472880 ZNF275Q9NSD4 429 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-210ENST00000472880 SH3GLB1Q9Y371 365 aa16.94■□□□□ 0.3
COL9A3-210ENST00000472880 SVEP1Q4LDE5 3571 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 IQCMA0A1B0GVH7 501 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 NCR1O76036 304 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 TFP02787 698 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 MT-ND1P03886 318 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 LCKP06239 509 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 CCL2P13500 99 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 DAP3P51398 398 aaKnown RBP16.93■□□□□ 0.3
COL9A3-210ENST00000472880 CRYBA2P53672 197 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 KLF3P57682 345 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-210ENST00000472880 TAS2R41P59536 307 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 MRPS11P82912 194 aaKnown RBP16.93■□□□□ 0.3
COL9A3-210ENST00000472880 MYBPC1Q00872 1141 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 GUCY1A3Q02108 690 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 PLP2Q04941 152 aa16.93■□□□□ 0.3
COL9A3-210ENST00000472880 RPL18Q07020 188 aaKnown RBP16.93■□□□□ 0.3
COL9A3-210ENST00000472880 CYLC2Q14093 348 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms