RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TPRA1Q86W33 373 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 ACOT12Q8WYK0 555 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 FOXN4Q96NZ1 517 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SH2D2AQ9NP31 389 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 VSX1Q9NZR4 365 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 LAMP5Q9UJQ1 280 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 RASD1Q9Y272 281 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 CCDC187A0A096LP49 1063 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 FAM25AB3EWG3 89 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 FAM25CB3EWG5 89 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 FAM25GB3EWG6 89 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 OPN1LWP04000 364 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 NANOS3P60323 173 aaKnown RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 MYBPHQ13203 477 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 CARTPTQ16568 116 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 ZNF468Q5VIY5 522 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 CDC20BQ86Y33 519 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 TMEM156Q8N614 296 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SETD6Q8TBK2 473 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 HSD17B8Q92506 261 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 KIAA1143Q96AT1 154 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SNX18Q96RF0 628 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 ANGPTL4Q9BY76 406 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 TMEM185BQ9H7F4 350 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 CHST11Q9NPF2 352 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 B9D1Q9UPM9 204 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 A0A0G2JK05 382 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 TRIM3O75382 744 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-205ENST00000466192 ELK1P19419 428 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 THBS2P35442 1172 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 SLC25A35Q3KQZ1 300 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 FAM220AQ7Z4H9 259 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 PLCZ1Q86YW0 608 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 TEX19Q8NA77 164 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 PAQR8Q8TEZ7 354 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 NTNG2Q96CW9 530 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 INTS14Q96SY0 518 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 SOSTQ9BQB4 213 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 PPP1R3EQ9H7J1 279 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 PTGES2Q9H7Z7 377 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 MRM2Q9UI43 246 aaKnown RBP16.39■□□□□ 0.21
COL9A3-205ENST00000466192 ING1Q9UK53 422 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-205ENST00000466192 FKBP7Q9Y680 259 aa16.39■□□□□ 0.21
COL9A3-205ENST00000466192 SLC22A23A1A5C7 686 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 HLA-DQA2P01906 255 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 SLC2A2P11168 524 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 PSKH1P11801 424 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 RAB3BP20337 219 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 CENPAP49450 140 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 RPS15P62841 145 aaKnown RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 TLE3Q04726 772 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 C3orf33Q6P1S2 294 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 PAMR1Q6UXH9 720 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 WDFY1Q8IWB7 410 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 CELF2-AS1Q8N7Q2 184 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 YIPF7Q8N8F6 280 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ZNF248Q8NDW4 579 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 RNF166Q96A37 237 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 SERINC1Q9NRX5 453 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ALKBH4Q9NXW9 302 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ADAM30Q9UKF2 790 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 IKZF2Q9UKS7 526 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 CNTRLQ7Z7A1 2325 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 A0A087WV48 116 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 SLC16A7O60669 478 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 SLC19A2O60779 497 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ZFPL1O95159 310 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 PAHP00439 452 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 HPP00738 406 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 TACSTD2P09758 323 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 CTLA4P16410 223 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 RFX2P48378 723 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 CHAF1BQ13112 559 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ETFDHQ16134 617 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 HES3Q5TGS1 186 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 LIPNQ5VXI9 398 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 SLC22A10Q63ZE4 541 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 Q8N402 240 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 THEM6Q8WUY1 208 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 NEDD4LQ96PU5 975 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 UBL7Q96S82 380 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 TSPAN10Q9H1Z9 355 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-205ENST00000466192 B3GAT2Q9NPZ5 323 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 HPF1Q9NWY4 346 aa16.38■□□□□ 0.21
COL9A3-205ENST00000466192 IGLV1-36A0A0B4J1U3 117 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 FAM47E-STBD1D6RA91 191 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 G3V3Y1 287 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 SNPHO15079 494 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 ARL6IP5O75915 188 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 CD1AP06126 327 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 ICAM2P13598 275 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 IFNGR1P15260 489 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 MAGEB1P43366 347 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 KCNJ8Q15842 424 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 B3GNTL1Q67FW5 361 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-205ENST00000466192 METAP1DQ6UB28 335 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-205ENST00000466192 MDGA2Q7Z553 956 aa16.37■□□□□ 0.21
COL9A3-205ENST00000466192 DND1Q8IYX4 353 aaKnown RBP16.37■□□□□ 0.21
COL9A3-205ENST00000466192 SAMD12Q8N8I0 201 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms