RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 LAMP3Q9UQV4 416 aa15.53■□□□□ 0.08
COL7A1-205ENST00000465238 M0R3G1 203 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 PDLIM1O00151 329 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 PTP4A3O75365 173 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 RAD51DO75771 328 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 CD3EP07766 207 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 ITGA5P08648 1049 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 CDH2P19022 906 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-205ENST00000465238 CSNK1A1P48729 337 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 FOXG1P55316 489 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-205ENST00000465238 ROR2Q01974 943 aaKnown RBP15.52■□□□□ 0.08
COL7A1-205ENST00000465238 CCNIQ14094 377 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 MICAQ29983 383 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 OR7E24Q6IFN5 339 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 C1orf94Q6P1W5 598 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 PGBD2Q6P3X8 592 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 IGFN1Q86VF2 1251 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 FBXW5Q969U6 566 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 ZNF566Q969W8 418 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 SLCO4A1Q96BD0 722 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 SLC25A44Q96H78 314 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-205ENST00000465238 ALKBH3Q96Q83 286 aaPredicted RBP15.52■□□□□ 0.08
COL7A1-205ENST00000465238 TXNIPQ9H3M7 391 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 VNN3Q9NY84 501 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 DNAJB9Q9UBS3 223 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 SIGLEC7Q9Y286 467 aa15.52■□□□□ 0.08
COL7A1-205ENST00000465238 NPIPB13A6NJU9 1138 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 NPIPB4C9JG80 1138 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 E2F6O75461 281 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 NDUFB2O95178 105 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 IGHG1P01857 330 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 FPR3P25089 353 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 PCSK6P29122 969 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 PPP2R2BQ00005 443 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 TOP3AQ13472 1001 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-205ENST00000465238 FHL1Q13642 323 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 STK11Q15831 433 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 GABRA6Q16445 453 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 P2RY8Q86VZ1 359 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 LRRC75AQ8NAA5 344 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 OR9Q2Q8NGE9 314 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 LILRB1Q8NHL6 650 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-205ENST00000465238 ASB10Q8WXI3 467 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 MUCL1Q96DR8 90 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 MUS81Q96NY9 551 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 GPA33Q99795 319 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 GPR35Q9HC97 309 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF346Q9UL40 294 aaKnown RBP15.51■□□□□ 0.07
COL7A1-205ENST00000465238 AP4S1Q9Y587 144 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 DNHD1Q96M86 4753 aa15.51■□□□□ 0.07
COL7A1-205ENST00000465238 OR5H1A6NKK0 313 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 RPL36A-HNRNPH2H7BZ11 118 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 OVOL3O00110 214 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 DEAF1O75398 565 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-205ENST00000465238 TIPRLO75663 272 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 ACADSP16219 412 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 GSSP48637 474 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 CLRN1P58418 232 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 RPL27P61353 136 aaKnown RBP15.5■□□□□ 0.07
COL7A1-205ENST00000465238 TSPAN31Q12999 210 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 ETFDHQ16134 617 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 CEACAM16Q2WEN9 425 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 PHYHD1Q5SRE7 291 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 ARMC4Q5T2S8 1044 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 SMARCD3Q6STE5 483 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 LINGO2Q7L985 606 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 SSX8Q7RTT4 187 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 WDFY1Q8IWB7 410 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 C1orf162Q8NEQ5 155 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-205ENST00000465238 GIPC3Q8TF64 312 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 TMEM54Q969K7 222 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 TRMT61AQ96FX7 289 aaKnown RBP15.5■□□□□ 0.07
COL7A1-205ENST00000465238 DUS3LQ96G46 650 aaKnown RBP15.5■□□□□ 0.07
COL7A1-205ENST00000465238 ULBP2Q9BZM5 246 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 CRLF2Q9HC73 371 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 ARMC1Q9NVT9 282 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 GLTPQ9NZD2 209 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 GRHPRQ9UBQ7 328 aa15.5■□□□□ 0.07
COL7A1-205ENST00000465238 A6NIZ1 184 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 CENPBD1B2RD01 187 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 TRMUO75648 421 aaKnown RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 GASTP01350 101 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 IGHMP01871 453 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 CD14P08571 375 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 DANCRP0C864 163 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ACVR1BP36896 505 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ARHGDIAP52565 204 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 SH3BGRP55822 239 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 RAP1BP61224 184 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 RAP1AP62834 184 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ERVK-25P63136 954 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ARF1P84077 181 aaKnown RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 BSPH1Q075Z2 132 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF672Q499Z4 452 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 TIMM23BQ5SRD1 257 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 FAM205BPQ63HN1 556 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF770Q6IQ21 691 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 SEZ6L2Q6UXD5 910 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 C10orf67Q8IYJ2 551 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 C17orf78Q8N4C9 275 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms